Information for 10-SYTASCCWSYSTGSTS (Motif 15)

A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G
Reverse Opposite:
A T G C C G T A A T G C A G T C G C T A A T C G C T G A A T G C C G T A A T C G A C T G A T G C C G A T C G T A C T G A T A G C
p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.780
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets38.3 +/- 26.6bp
Average Position of motif in Background51.4 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:SYTASCCWSYSTGSTS--
------CAGTGTGGTCGC
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---SYTASCCWSYSTGSTS-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---SYTASCCWSYSTGSTS--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:SYTASCCWSYSTGSTS--
------CCCCCTGCTGTG
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.50
Offset:6
Orientation:forward strand
Alignment:SYTASCCWSYSTGSTS
------CTGTCTGG--
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:forward strand
Alignment:SYTASCCWSYSTGSTS
----VBSYGTCTGG--
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---SYTASCCWSYSTGSTS
GCTGTTACCCT--------
 A C G T A C G T A C G T A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:forward strand
Alignment:SYTASCCWSYSTGSTS-
-----CGTGGGTGGTCC
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:SYTASCCWSYSTGSTS--
------NNHTGTGGTTWN
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.47
Offset:0
Orientation:forward strand
Alignment:SYTASCCWSYSTGSTS
GTCACGCTCNCTGA--
 A T C G A G C T A C G T G C T A T A C G A G T C A T G C C G A T A T C G A G C T A T G C C G A T A C T G T A C G A C G T T A C G
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T A C G T