Information for 8-CTATTAAACG (Motif 13)

A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
Reverse Opposite:
G T A C C T A G A C G T A C G T A C G T G T C A G T C A A C G T C G T A A C T G
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.880
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.0 +/- 30.4bp
Average Position of motif in Background42.0 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTATTAAACG
--ATTAAA--
 A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAACG
NGCAATTAAA--
 A C G T A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTATTAAACG--
--GCTAAACGGT
 A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTATTAAACG
GNCTATAAAAGG
 A C G T A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

GSX2/MA0893.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAACG
ACTAATTAAA--
 A C G T A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
CCAATAAAAC-
 A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTATTAAACG
CAATTAA---
 A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
GCAATTAG---
 A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAACG
NCYAATAAAA--
 A C G T A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
CTAATTAA---
 A C G T A G T C A C G T C G T A A C G T A C G T C G T A G T C A C G T A A G T C A C T G
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T