Information for 3-GVAGAGGGSVCCCBCT (Motif 5)

A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
Reverse Opposite:
C G T A C T A G T A C G A C T G A C T G A C T G A G T C T A C G A G T C A G T C G T A C A C G T A G T C C G A T A T G C A T G C
p-value:1e-12
log p-value:-2.795e+01
Information Content per bp:1.733
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.2 +/- 21.4bp
Average Position of motif in Background37.9 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GVAGAGGGSVCCCBCT-
-NNNGGGGCGCCCCCNN
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T A C G T
A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

E2F3/MA0469.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GVAGAGGGSVCCCBCT--
AAAAATGGCGCCATTTTT
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

E2F2/MA0864.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GVAGAGGGSVCCCBCT-
-AAAATGGCGCCATTTT
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T A C G T
A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GVAGAGGGSVCCCBCT
-----TGGGGCCCAC-
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GVAGAGGGSVCCCBCT
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GVAGAGGGSVCCCBCT---
--NNNNGGTACCCCCCANN
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GVAGAGGGSVCCCBCT
-ATAAGGGCGCGCGAT
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GVAGAGGGSVCCCBCT
TGGCCACCAGGGGGCGCTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GVAGAGGGSVCCCBCT
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GVAGAGGGSVCCCBCT
CAAGATGGCGGC----
 A T C G T A C G C G T A C T A G T C G A A C T G A C T G A C T G A T G C T A C G A G T C A G T C G T A C A G T C A G T C A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T