Information for 5-GGTGGCATAC (Motif 4)

A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
Reverse Opposite:
C A T G A C G T T G C A A C G T A T C G A G T C A G T C C T G A A G T C A G T C
p-value:1e-12
log p-value:-2.829e+01
Information Content per bp:1.855
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif154.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets39.8 +/- 30.3bp
Average Position of motif in Background46.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATAC
GGTTGGCAT--
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCATAC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCATAC--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCATAC-
AGGTGHCAGACA
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATAC--
AGGTGNCAGACAG
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCATAC
AGGTGTCA---
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATAC
NGTGGGCAT--
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTGGCATAC
NTTGGCANN-
 A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCATAC
AGGTGTGA---
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATAC
NNTTGGCANN-
 A C G T A C T G A C T G A G C T A C T G A C T G A T G C C G T A A C G T T G C A G T A C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T