Information for 8-AGTAGTTCAATCT (Motif 5)

C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
Reverse Opposite:
C G T A A T C G G T C A A C G T A C G T C A T G C G T A C G T A A G T C A C G T C G T A A G T C A C G T
p-value:1e-13
log p-value:-3.098e+01
Information Content per bp:1.824
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.8 +/- 23.5bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AGTAGTTCAATCT
TTTTAAGTACTTAAATT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AGTAGTTCAATCT
TACTAAGTACTTAAATG-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGTAGTTCAATCT
CNTTAAGTACTTAANG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGTAGTTCAATCT
TTCNAAGTACTTNNNNN-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTAGTTCAATCT
--TAATTTAATCA
 C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
A C G T A C G T G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGTAGTTCAATCT
AATAATT------
 C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0054.1_Hoxa7_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGTAGTTCAATCT
GNNNATTAATTAANNCG
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
C A T G T G A C G C A T G C A T C T G A C A G T G A C T G C T A C G T A G C A T C G A T C T G A G T C A G A T C C A G T A G T C A T C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTAGTTCAATCT
TATAAGTAGGTCAA---
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGTAGTTCAATCT-
CNNANTAATTAATTNNC
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTAGTTCAATCT----
-GAAGATCAATCACTAA
 C G T A A C T G A C G T C G T A T C A G C G A T A C G T G A T C G T C A G T C A C A G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A