Information for 17-ATAAAACAGA (Motif 33)

C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T C T A G A C G T A C G T A C G T A C G T C G T A A C G T
p-value:1e-6
log p-value:-1.546e+01
Information Content per bp:1.943
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.7 +/- 13.4bp
Average Position of motif in Background46.8 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACAGA
CCAATAAAAA---
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACAGA
NCYAATAAAA----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACAGA
GTCATAAAAN---
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACAGA
NGYCATAAAWCH--
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------ATAAAACAGA-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACAGA
CCAATAAAAC---
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------ATAAAACAGA
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACAGA
GCAATAAAA----
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACAGA
CCAATAAAAA---
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAACAGA
AAGCCATAAAA----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T