Information for 4-CTGCTGCCASCNCSTG (Motif 3)

A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
Reverse Opposite:
A G T C C G T A A T C G A T C G C G A T A C T G T A G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G
p-value:1e-28
log p-value:-6.525e+01
Information Content per bp:1.814
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets37.4 +/- 19.1bp
Average Position of motif in Background21.5 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGCTGCCASCNCSTG
---ATGCCAACC----
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGCTGCCASCNCSTG----
ANAGTGCCACCTGGTGGCCA
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCTGCCASCNCSTG
--SCTGTCARCACC--
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCTGCCASCNCSTG----
-TAGCGCCCCCTGGTGGCCA
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGCTGCCASCNCSTG
---CTGCCCGCA----
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGCCASCNCSTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGCTGCCASCNCSTG
---TTGCCAAG-----
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGCTGCCASCNCSTG
ACTATGCCAACCTACC
 A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCCASCNCSTG
NNAGCAGCTGCT--------
 A C G T A C G T A C G T A C G T A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGCCASCNCSTG
CAGCAGCTGN---------
 A C G T A C G T A C G T A G T C A C G T C T A G A T G C A C G T A C T G G T A C A G T C G T C A A T C G A G T C C G T A A T G C T A G C A C G T T A C G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T