Information for 5-ACTAATTWAG (Motif 9)

G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
Reverse Opposite:
A G T C C G A T G C T A G T C A T G C A A G C T A G C T T G C A A C T G C A G T
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.633
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.28%
Number of Background Sequences with motif635.6
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets49.9 +/- 30.3bp
Average Position of motif in Background49.2 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

mix-a/MA0621.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:ACTAATTWAG-
NCTAATTAANN
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G A C G T
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----ACTAATTWAG--
GTGCACTAATTAAGAC
 A C G T A C G T A C G T A C G T G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G A C G T A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ACTAATTWAG
ACTAATTAAC
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

PH0028.1_En1/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----ACTAATTWAG--
GCGAACTAATTAATGC
 A C G T A C G T A C G T A C G T G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:ACTAATTWAG
-CTAATTAA-
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T

VSX2/MA0726.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:ACTAATTWAG
-CTAATTAG-
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ACTAATTWAG
-TTAATTAA-
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
A C G T A G C T G A C T T C G A C G T A C G A T A C G T C T G A T C G A A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ACTAATTWAG
NCTAATTA--
 G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T

PH0133.1_Pax7/Jaspar

Match Rank:9
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATTWAG---
NNNTNCTAATTAGNTCN
 A C G T A C G T A C G T A C G T G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G A C G T A C G T A C G T
G A C T G T C A A C T G C G A T T G C A G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T C G A T A T G C C A T G

PH0147.1_Pou3f2/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ACTAATTWAG----
NNNACTAATTAATTANC
 A C G T A C G T A C G T G T C A G T A C A C G T C T G A C T G A A C G T C A G T C G A T G C T A T C A G A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C