Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 803)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48246)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-310	-7.160e+02	0.0000	234.0	29.14%	294.3	0.61%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-253	-5.839e+02	0.0000	236.0	29.39%	540.8	1.12%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-7	-1.784e+01	0.0000	190.0	23.66%	7759.9	16.08%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.547e+01	0.0000	67.0	8.34%	2046.7	4.24%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-6	-1.407e+01	0.0001	7.0	0.87%	29.6	0.06%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-4	-1.127e+01	0.0008	45.0	5.60%	1348.7	2.79%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-9.514e+00	0.0038	54.0	6.72%	1857.6	3.85%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-9.350e+00	0.0040	45.0	5.60%	1464.7	3.03%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.983e+00	0.0051	65.0	8.09%	2413.3	5.00%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-8.975e+00	0.0051	23.0	2.86%	570.8	1.18%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.839e+00	0.0051	106.0	13.20%	4460.7	9.24%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.564e+00	0.0058	38.0	4.73%	1207.3	2.50%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-8.528e+00	0.0058	22.0	2.74%	550.6	1.14%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.487e+00	0.0058	279.0	34.74%	13967.5	28.94%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-3	-8.347e+00	0.0058	51.0	6.35%	1808.9	3.75%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-3	-7.462e+00	0.0131	15.0	1.87%	331.8	0.69%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-7.304e+00	0.0144	110.0	13.70%	4867.3	10.08%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.283e+00	0.0144	39.0	4.86%	1338.6	2.77%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-7.255e+00	0.0144	18.0	2.24%	449.8	0.93%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.195e+00	0.0144	41.0	5.11%	1436.5	2.98%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-3	-7.193e+00	0.0144	20.0	2.49%	529.5	1.10%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-7.006e+00	0.0150	89.0	11.08%	3816.1	7.91%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-6.960e+00	0.0150	22.0	2.74%	620.5	1.29%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-6.677e+00	0.0191	9.0	1.12%	153.3	0.32%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.592e+00	0.0200	66.0	8.22%	2698.9	5.59%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-6.579e+00	0.0200	171.0	21.30%	8278.6	17.15%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.242e+00	0.0262	43.0	5.35%	1608.7	3.33%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.226e+00	0.0262	53.0	6.60%	2093.5	4.34%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.985e+00	0.0305	8.0	1.00%	138.3	0.29%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.985e+00	0.0305	8.0	1.00%	138.3	0.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.843e+00	0.0340	14.0	1.74%	353.5	0.73%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.670e+00	0.0392	74.0	9.22%	3218.1	6.67%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-5.280e+00	0.0562	99.0	12.33%	4593.5	9.52%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.189e+00	0.0597	113.0	14.07%	5363.9	11.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-5.135e+00	0.0612	63.0	7.85%	2722.8	5.64%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-4.984e+00	0.0692	6.0	0.75%	99.5	0.21%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-4.899e+00	0.0734	17.0	2.12%	520.3	1.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.798e+00	0.0790	173.0	21.54%	8765.4	18.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-4.776e+00	0.0790	26.0	3.24%	931.1	1.93%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-4.735e+00	0.0799	23.0	2.86%	796.2	1.65%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-4.668e+00	0.0834	37.0	4.61%	1467.6	3.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-4.612e+00	0.0860	48.0	5.98%	2022.2	4.19%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-2	-4.610e+00	0.0860	110.0	13.70%	5308.3	11.00%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-4.610e+00	0.0860	35.0	4.36%	1375.7	2.85%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.495e+00	0.0903	80.0	9.96%	3708.4	7.68%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-4.462e+00	0.0913	12.0	1.49%	334.6	0.69%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.391e+00	0.0959	52.0	6.48%	2254.5	4.67%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-4.248e+00	0.1083	52.0	6.48%	2273.5	4.71%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.206e+00	0.1107	27.0	3.36%	1026.5	2.13%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-4.151e+00	0.1147	41.0	5.11%	1723.5	3.57%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-4.071e+00	0.1217	31.0	3.86%	1233.3	2.56%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.963e+00	0.1330	133.0	16.56%	6718.5	13.92%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.918e+00	0.1366	13.0	1.62%	404.5	0.84%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.841e+00	0.1448	8.0	1.00%	202.5	0.42%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-3.818e+00	0.1454	23.0	2.86%	869.9	1.80%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.811e+00	0.1454	63.0	7.85%	2915.1	6.04%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.751e+00	0.1501	35.0	4.36%	1467.3	3.04%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.717e+00	0.1525	4.0	0.50%	65.6	0.14%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.699e+00	0.1527	27.0	3.36%	1074.6	2.23%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.690e+00	0.1527	8.0	1.00%	208.1	0.43%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.606e+00	0.1621	36.0	4.48%	1535.7	3.18%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.427e+00	0.1908	123.0	15.32%	6288.3	13.03%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.399e+00	0.1930	77.0	9.59%	3744.7	7.76%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.326e+00	0.2043	65.0	8.09%	3106.2	6.44%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.297e+00	0.2071	19.0	2.37%	723.7	1.50%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.249e+00	0.2140	38.0	4.73%	1684.3	3.49%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.153e+00	0.2321	4.0	0.50%	78.3	0.16%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.149e+00	0.2321	30.0	3.74%	1285.5	2.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.068e+00	0.2454	63.0	7.85%	3046.7	6.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.052e+00	0.2457	46.0	5.73%	2134.2	4.42%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.037e+00	0.2459	14.0	1.74%	507.1	1.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.022e+00	0.2461	1.0	0.12%	3.6	0.01%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.939e+00	0.2638	9.0	1.12%	287.0	0.59%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.933e+00	0.2638	30.0	3.74%	1312.3	2.72%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.917e+00	0.2638	27.0	3.36%	1160.2	2.40%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-1	-2.909e+00	0.2638	92.0	11.46%	4680.1	9.70%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.898e+00	0.2638	21.0	2.62%	859.4	1.78%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.849e+00	0.2703	10.0	1.25%	336.2	0.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.828e+00	0.2723	23.0	2.86%	967.6	2.00%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.824e+00	0.2723	36.0	4.48%	1640.5	3.40%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.820e+00	0.2723	23.0	2.86%	968.5	2.01%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-2.803e+00	0.2723	9.0	1.12%	294.1	0.61%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.793e+00	0.2723	23.0	2.86%	971.6	2.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.784e+00	0.2723	8.0	1.00%	251.8	0.52%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.755e+00	0.2723	11.0	1.37%	388.5	0.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.750e+00	0.2723	33.0	4.11%	1493.5	3.09%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.747e+00	0.2723	17.0	2.12%	676.5	1.40%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.699e+00	0.2781	20.0	2.49%	830.6	1.72%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.696e+00	0.2781	26.0	3.24%	1136.7	2.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.678e+00	0.2781	13.0	1.62%	489.0	1.01%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.640e+00	0.2854	27.0	3.36%	1196.0	2.48%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.640e+00	0.2854	16.0	1.99%	637.6	1.32%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.571e+00	0.2993	6.0	0.75%	176.2	0.37%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.539e+00	0.3058	36.0	4.48%	1684.4	3.49%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.536e+00	0.3058	16.0	1.99%	647.6	1.34%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.532e+00	0.3058	23.0	2.86%	1002.8	2.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.526e+00	0.3058	18.0	2.24%	748.4	1.55%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-2.520e+00	0.3058	72.0	8.97%	3658.6	7.58%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.445e+00	0.3189	53.0	6.60%	2623.9	5.44%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.424e+00	0.3225	26.0	3.24%	1173.0	2.43%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.423e+00	0.3225	19.0	2.37%	810.5	1.68%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.416e+00	0.3225	9.0	1.12%	319.8	0.66%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.395e+00	0.3225	75.0	9.34%	3856.7	7.99%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.329e+00	0.3410	23.0	2.86%	1028.8	2.13%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.300e+00	0.3477	17.0	2.12%	722.7	1.50%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.266e+00	0.3563	33.0	4.11%	1568.4	3.25%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.098e+00	0.4176	24.0	2.99%	1113.4	2.31%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.070e+00	0.4253	6.0	0.75%	203.9	0.42%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.069e+00	0.4253	22.0	2.74%	1011.1	2.09%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.059e+00	0.4253	29.0	3.61%	1387.4	2.87%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.025e+00	0.4330	30.0	3.74%	1447.1	3.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.973e+00	0.4520	1.0	0.12%	9.2	0.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.971e+00	0.4520	13.0	1.62%	554.0	1.15%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.936e+00	0.4607	11.0	1.37%	456.7	0.95%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.883e+00	0.4815	63.0	7.85%	3314.1	6.87%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.872e+00	0.4824	20.0	2.49%	933.9	1.93%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.856e+00	0.4861	19.0	2.37%	882.9	1.83%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.855e+00	0.4861	5.0	0.62%	171.0	0.35%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.849e+00	0.4861	61.0	7.60%	3210.2	6.65%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.848e+00	0.4861	17.0	2.12%	777.8	1.61%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.826e+00	0.4861	18.0	2.24%	833.1	1.73%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.813e+00	0.4868	7.0	0.87%	268.8	0.56%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.781e+00	0.4988	6.0	0.75%	222.2	0.46%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.734e+00	0.5185	13.0	1.62%	581.2	1.20%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.715e+00	0.5242	161.0	20.05%	9040.4	18.73%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.688e+00	0.5339	20.0	2.49%	961.8	1.99%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.685e+00	0.5339	30.0	3.74%	1510.2	3.13%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.681e+00	0.5339	4.0	0.50%	134.0	0.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.634e+00	0.5504	27.0	3.36%	1354.7	2.81%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.619e+00	0.5545	81.0	10.09%	4424.5	9.17%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.592e+00	0.5653	5.0	0.62%	187.7	0.39%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.578e+00	0.5693	14.0	1.74%	654.3	1.36%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.575e+00	0.5693	16.0	1.99%	762.0	1.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.550e+00	0.5766	9.0	1.12%	393.3	0.81%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.538e+00	0.5790	2.0	0.25%	52.4	0.11%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.537e+00	0.5790	119.0	14.82%	6662.7	13.80%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.534e+00	0.5790	15.0	1.87%	714.2	1.48%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.520e+00	0.5790	15.0	1.87%	716.0	1.48%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.518e+00	0.5790	7.0	0.87%	293.1	0.61%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.516e+00	0.5790	88.0	10.96%	4866.6	10.08%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.514e+00	0.5790	72.0	8.97%	3941.2	8.17%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.487e+00	0.5794	12.0	1.49%	559.2	1.16%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.478e+00	0.5806	14.0	1.74%	668.6	1.39%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.457e+00	0.5889	32.0	3.99%	1671.4	3.46%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.450e+00	0.5889	6.0	0.75%	248.4	0.51%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.417e+00	0.6045	14.0	1.74%	677.6	1.40%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.414e+00	0.6045	9.0	1.12%	408.4	0.85%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.403e+00	0.6047	7.0	0.87%	304.0	0.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.401e+00	0.6047	3.0	0.37%	103.7	0.21%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.389e+00	0.6052	9.0	1.12%	411.2	0.85%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.384e+00	0.6052	62.0	7.72%	3408.1	7.06%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.313e+00	0.6445	30.0	3.74%	1592.1	3.30%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.264e+00	0.6720	31.0	3.86%	1661.6	3.44%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.256e+00	0.6730	4.0	0.50%	162.0	0.34%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.249e+00	0.6738	79.0	9.84%	4447.6	9.21%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.248e+00	0.6738	6.0	0.75%	267.6	0.55%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.244e+00	0.6738	34.0	4.23%	1838.3	3.81%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.228e+00	0.6748	12.0	1.49%	596.5	1.24%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.217e+00	0.6781	21.0	2.62%	1103.0	2.29%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.193e+00	0.6902	22.0	2.74%	1166.0	2.42%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.182e+00	0.6931	1.0	0.12%	22.4	0.05%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.170e+00	0.6976	72.0	8.97%	4070.4	8.43%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.131e+00	0.7205	7.0	0.87%	334.9	0.69%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.125e+00	0.7205	2.0	0.25%	70.3	0.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.099e+00	0.7351	7.0	0.87%	338.9	0.70%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.089e+00	0.7382	4.0	0.50%	176.0	0.36%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.074e+00	0.7448	13.0	1.62%	678.5	1.41%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.057e+00	0.7527	6.0	0.75%	288.3	0.60%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.046e+00	0.7565	1.0	0.12%	26.0	0.05%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.043e+00	0.7565	8.0	1.00%	401.6	0.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.026e+00	0.7628	49.0	6.10%	2779.6	5.76%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.024e+00	0.7628	21.0	2.62%	1147.2	2.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.024e+00	0.7628	18.0	2.24%	974.8	2.02%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.016e+00	0.7628	27.0	3.36%	1497.1	3.10%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.012e+00	0.7628	21.0	2.62%	1150.1	2.38%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.009e+00	0.7628	8.0	1.00%	406.7	0.84%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.007e+00	0.7628	168.0	20.92%	9837.3	20.38%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.004e+00	0.7628	21.0	2.62%	1152.9	2.39%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.001e+00	0.7628	25.0	3.11%	1385.8	2.87%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.978e-01	0.7628	10.0	1.25%	521.9	1.08%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.978e-01	0.7628	88.0	10.96%	5091.4	10.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.887e-01	0.7628	8.0	1.00%	409.3	0.85%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.847e-01	0.7628	38.0	4.73%	2149.1	4.45%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.720e-01	0.7628	2.0	0.25%	79.8	0.17%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-9.297e-01	0.7765	23.0	2.86%	1288.7	2.67%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-9.214e-01	0.7788	29.0	3.61%	1642.3	3.40%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.089e-01	0.7844	3.0	0.37%	138.4	0.29%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.087e-01	0.7844	1.0	0.12%	31.5	0.07%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.923e-01	0.7890	32.0	3.99%	1828.8	3.79%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.901e-01	0.7890	48.0	5.98%	2774.0	5.75%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.866e-01	0.7890	5.0	0.62%	253.1	0.52%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-8.851e-01	0.7890	19.0	2.37%	1066.3	2.21%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.798e-01	0.7890	10.0	1.25%	542.1	1.12%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-8.731e-01	0.7890	87.0	10.83%	5098.1	10.56%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.661e-01	0.7890	3.0	0.37%	142.2	0.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.608e-01	0.7890	17.0	2.12%	955.5	1.98%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.557e-01	0.7890	3.0	0.37%	143.7	0.30%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-8.517e-01	0.7890	60.0	7.47%	3504.0	7.26%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.332e-01	0.7951	5.0	0.62%	260.1	0.54%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.305e-01	0.7951	2.0	0.25%	89.2	0.18%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.043e-01	0.8102	9.0	1.12%	498.6	1.03%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.846e-01	0.8223	168.0	20.92%	9998.8	20.72%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.759e-01	0.8253	5.0	0.62%	268.3	0.56%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.578e-01	0.8363	1.0	0.12%	38.7	0.08%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.554e-01	0.8363	5.0	0.62%	271.4	0.56%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-7.471e-01	0.8371	8.0	1.00%	450.7	0.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.419e-01	0.8374	8.0	1.00%	451.7	0.94%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.326e-01	0.8411	3.0	0.37%	156.5	0.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.263e-01	0.8424	4.0	0.50%	216.1	0.45%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.202e-01	0.8435	9.0	1.12%	515.4	1.07%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.176e-01	0.8435	18.0	2.24%	1054.1	2.18%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.108e-01	0.8435	19.0	2.37%	1116.9	2.31%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.068e-01	0.8435	33.0	4.11%	1957.7	4.06%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.916e-01	0.8518	18.0	2.24%	1062.6	2.20%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.629e-01	0.8725	27.0	3.36%	1614.9	3.35%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.537e-01	0.8765	28.0	3.49%	1678.3	3.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.512e-01	0.8765	2.0	0.25%	105.6	0.22%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.413e-01	0.8793	157.0	19.55%	9458.7	19.60%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.113e-01	0.9019	1.0	0.12%	48.0	0.10%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.113e-01	0.9019	40.0	4.98%	2423.8	5.02%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.068e-01	0.9019	6.0	0.75%	357.5	0.74%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-6.047e-01	0.9019	52.0	6.48%	3153.9	6.53%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.045e-01	0.9019	2.0	0.25%	110.0	0.23%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.957e-01	0.9019	2.0	0.25%	111.6	0.23%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.746e-01	0.9107	26.0	3.24%	1590.0	3.29%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.681e-01	0.9126	15.0	1.87%	920.5	1.91%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.616e-01	0.9145	73.0	9.09%	4453.6	9.23%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.525e-01	0.9188	49.0	6.10%	3003.0	6.22%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.522e-01	0.9188	8.0	1.00%	493.2	1.02%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.521e-01	0.9188	10.0	1.25%	617.5	1.28%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.410e-01	0.9188	26.0	3.24%	1605.6	3.33%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.390e-01	0.9188	23.0	2.86%	1422.7	2.95%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.296e-01	0.9199	2.0	0.25%	119.9	0.25%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-5.281e-01	0.9199	26.0	3.24%	1611.4	3.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.245e-01	0.9199	10.0	1.25%	625.5	1.30%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-5.219e-01	0.9199	2.0	0.25%	120.3	0.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.179e-01	0.9199	5.0	0.62%	313.2	0.65%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.032e-01	0.9246	43.0	5.35%	2666.3	5.52%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.004e-01	0.9246	1.0	0.12%	56.7	0.12%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.895e-01	0.9296	12.0	1.49%	761.5	1.58%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.881e-01	0.9296	13.0	1.62%	824.7	1.71%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.712e-01	0.9390	23.0	2.86%	1453.4	3.01%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.657e-01	0.9403	6.0	0.75%	390.0	0.81%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.625e-01	0.9403	21.0	2.62%	1333.2	2.76%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.606e-01	0.9403	18.0	2.24%	1147.6	2.38%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.592e-01	0.9403	43.0	5.35%	2694.6	5.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.576e-01	0.9403	10.0	1.25%	646.0	1.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-4.515e-01	0.9403	2.0	0.25%	130.6	0.27%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.475e-01	0.9403	102.0	12.70%	6312.8	13.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.457e-01	0.9403	65.0	8.09%	4054.2	8.40%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.443e-01	0.9403	7.0	0.87%	459.7	0.95%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.443e-01	0.9403	7.0	0.87%	459.1	0.95%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.387e-01	0.9403	2.0	0.25%	132.0	0.27%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.273e-01	0.9403	7.0	0.87%	464.2	0.96%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.269e-01	0.9403	19.0	2.37%	1225.2	2.54%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.258e-01	0.9403	15.0	1.87%	974.2	2.02%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.226e-01	0.9403	43.0	5.35%	2719.8	5.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.209e-01	0.9403	3.0	0.37%	203.5	0.42%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-4.171e-01	0.9403	30.0	3.74%	1917.1	3.97%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.140e-01	0.9403	6.0	0.75%	403.3	0.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.098e-01	0.9403	26.0	3.24%	1672.1	3.46%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.087e-01	0.9403	23.0	2.86%	1485.7	3.08%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.083e-01	0.9403	2.0	0.25%	137.4	0.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.928e-01	0.9403	21.0	2.62%	1368.7	2.84%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.912e-01	0.9403	11.0	1.37%	735.0	1.52%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.810e-01	0.9403	26.0	3.24%	1689.8	3.50%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.689e-01	0.9427	14.0	1.74%	936.7	1.94%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.626e-01	0.9451	10.0	1.25%	682.0	1.41%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.564e-01	0.9475	7.0	0.87%	487.0	1.01%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.497e-01	0.9503	91.0	11.33%	5742.0	11.90%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.381e-01	0.9579	1.0	0.12%	75.4	0.16%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.337e-01	0.9585	79.0	9.84%	5021.4	10.40%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.271e-01	0.9614	71.0	8.84%	4534.2	9.39%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.267e-01	0.9614	55.0	6.85%	3542.2	7.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.257e-01	0.9614	115.0	14.32%	7245.1	15.01%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.123e-01	0.9650	6.0	0.75%	436.2	0.90%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.085e-01	0.9653	7.0	0.87%	505.4	1.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.074e-01	0.9653	55.0	6.85%	3561.3	7.38%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.068e-01	0.9653	65.0	8.09%	4184.5	8.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.968e-01	0.9661	30.0	3.74%	2000.1	4.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.838e-01	0.9753	4.0	0.50%	308.9	0.64%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.822e-01	0.9753	3.0	0.37%	237.5	0.49%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.782e-01	0.9753	1.0	0.12%	85.6	0.18%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.769e-01	0.9753	73.0	9.09%	4716.4	9.77%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.682e-01	0.9767	21.0	2.62%	1446.3	3.00%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.646e-01	0.9768	50.0	6.23%	3293.7	6.82%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.644e-01	0.9768	23.0	2.86%	1578.7	3.27%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.642e-01	0.9768	41.0	5.11%	2727.0	5.65%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.641e-01	0.9768	53.0	6.60%	3482.0	7.21%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.587e-01	0.9768	31.0	3.86%	2096.1	4.34%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.537e-01	0.9768	19.0	2.37%	1327.3	2.75%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.423e-01	0.9784	62.0	7.72%	4073.2	8.44%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.389e-01	0.9784	1.0	0.12%	93.3	0.19%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.164e-01	0.9971	79.0	9.84%	5174.4	10.72%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.134e-01	0.9971	64.0	7.97%	4238.2	8.78%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.067e-01	1.0000	32.0	3.99%	2212.5	4.58%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.049e-01	1.0000	3.0	0.37%	264.5	0.55%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.035e-01	1.0000	58.0	7.22%	3874.2	8.03%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.936e-01	1.0000	5.0	0.62%	418.1	0.87%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.905e-01	1.0000	6.0	0.75%	492.5	1.02%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.877e-01	1.0000	1.0	0.12%	106.1	0.22%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.877e-01	1.0000	1.0	0.12%	106.7	0.22%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.812e-01	1.0000	9.0	1.12%	710.7	1.47%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.792e-01	1.0000	13.0	1.62%	987.6	2.05%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.748e-01	1.0000	16.0	1.99%	1194.1	2.47%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.744e-01	1.0000	1.0	0.12%	110.9	0.23%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.724e-01	1.0000	55.0	6.85%	3731.5	7.73%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.614e-01	1.0000	3.0	0.37%	284.5	0.59%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.570e-01	1.0000	12.0	1.49%	938.2	1.94%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.536e-01	1.0000	4.0	0.50%	366.3	0.76%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.461e-01	1.0000	18.0	2.24%	1359.1	2.82%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.342e-01	1.0000	32.0	3.99%	2307.2	4.78%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.319e-01	1.0000	5.0	0.62%	457.2	0.95%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.272e-01	1.0000	25.0	3.11%	1854.7	3.84%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.175e-01	1.0000	33.0	4.11%	2401.6	4.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.142e-01	1.0000	12.0	1.49%	983.9	2.04%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.113e-01	1.0000	21.0	2.62%	1609.9	3.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.095e-01	1.0000	1.0	0.12%	136.8	0.28%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.038e-01	1.0000	23.0	2.86%	1757.1	3.64%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.035e-01	1.0000	45.0	5.60%	3218.0	6.67%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.003e-01	1.0000	1.0	0.12%	141.4	0.29%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.003e-01	1.0000	1.0	0.12%	141.0	0.29%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.603e-02	1.0000	9.0	1.12%	790.3	1.64%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.979e-02	1.0000	7.0	0.87%	649.7	1.35%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.874e-02	1.0000	1.0	0.12%	148.6	0.31%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.580e-02	1.0000	7.0	0.87%	655.0	1.36%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.422e-02	1.0000	1.0	0.12%	151.7	0.31%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.440e-02	1.0000	37.0	4.61%	2763.0	5.72%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.174e-02	1.0000	11.0	1.37%	973.8	2.02%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.560e-02	1.0000	6.0	0.75%	605.9	1.26%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.506e-02	1.0000	7.0	0.87%	684.7	1.42%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.439e-02	1.0000	13.0	1.62%	1133.8	2.35%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.042e-02	1.0000	5.0	0.62%	533.1	1.10%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.030e-02	1.0000	11.0	1.37%	995.5	2.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.430e-02	1.0000	19.0	2.37%	1587.8	3.29%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.303e-02	1.0000	11.0	1.37%	1011.9	2.10%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.284e-02	1.0000	1.0	0.12%	178.1	0.37%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.362e-02	1.0000	54.0	6.72%	4007.4	8.30%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.303e-02	1.0000	1.0	0.12%	190.8	0.40%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.019e-02	1.0000	1.0	0.12%	194.1	0.40%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.712e-02	1.0000	3.0	0.37%	403.1	0.84%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.634e-02	1.0000	59.0	7.35%	4379.1	9.07%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.068e-02	1.0000	10.0	1.25%	1000.3	2.07%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.766e-02	1.0000	1.0	0.12%	216.7	0.45%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.674e-02	1.0000	1.0	0.12%	218.3	0.45%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.006e-02	1.0000	1.0	0.12%	235.5	0.49%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.000e-02	1.0000	14.0	1.74%	1358.2	2.81%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.778e-02	1.0000	34.0	4.23%	2823.5	5.85%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.629e-02	1.0000	32.0	3.99%	2697.7	5.59%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.133e-03	1.0000	7.0	0.87%	891.5	1.85%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.242e-03	1.0000	2.0	0.25%	430.0	0.89%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.636e-03	1.0000	21.0	2.62%	2203.6	4.57%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	67.8	0.14%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	61.9	0.13%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	44.8	0.09%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	31.4	0.07%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	93.1	0.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	38.1	0.08%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	24.0	0.05%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.6	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	28.9	0.06%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	14.8	0.03%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	204.8	0.42%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	10.3	0.02%