Information for 9-TRTGAAATRAAAY (Motif 12)

A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T A G C T G A C T C G T A A C G T A C G T A C G T A G T C C G T A A G T C C G T A
p-value:1e-8
log p-value:-1.956e+01
Information Content per bp:1.899
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.5 +/- 24.5bp
Average Position of motif in Background44.4 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TRTGAAATRAAAY---
TAGGTAATAAAATTCA
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TRTGAAATRAAAY
-CGGAAGTGAAAC
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TRTGAAATRAAAY
---GCAATAAAAA
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TRTGAAATRAAAY-
--GGAAGTGAAAST
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C A C G T
A C G T A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TRTGAAATRAAAY
---GTCATAAAAN
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TRTGAAATRAAAY----
AATGCAATAAAATTTAT
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TRTGAAATRAAAY
--GGTAATAAAAA
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TRTGAAATRAAAY
-AAGCCATAAAA-
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TRTGAAATRAAAY
---GCAATAAAA-
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TRTGAAATRAAAY-
--GAAAMTGAAACT
 A C G T C T A G A C G T A C T G C G T A C G T A C G T A A C G T C T A G C T G A C G T A C G T A A G T C A C G T
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T