Information for 3-CGCCCTCTAGBGG (Motif 4)

A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G
Reverse Opposite:
G T A C A G T C T C G A A T G C A G C T C G T A A C T G C G T A A T C G A C T G A C T G A T G C A C T G
p-value:1e-13
log p-value:-3.017e+01
Information Content per bp:1.838
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.4 +/- 26.9bp
Average Position of motif in Background42.1 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CGCCCTCTAGBGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCTCTAGBGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTAGBGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGCCCTCTAGBGG
----NTCAAGTGG
 A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G
A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGCCCTCTAGBGG-
----BTBRAGTGSN
 A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGCCCTCTAGBGG-
----NTCAAGTGGN
 A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCTCTAGBGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCTCTAGBGG
GCCGCCATCTTG---
 A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCCCTCTAGBGG----
NANTTTCAAGTGGTTAN
 A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCCCTCTAGBGG
GCCMCGCCCMCY-----
 A C G T A C G T A C G T A C G T A G T C A T C G A G T C A G T C T A G C A C G T A G T C C G A T C T G A A T C G A G C T A C T G A C T G
T A C G A G T C G A T C T G A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C G A T C A C G T A C G T A C G T A C G T A C G T