Information for 7-CAGCAGGCCCCGC (Motif 10)

A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
Reverse Opposite:
A C T G A G T C T A C G C A T G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G C T A C T G
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.889
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.0 +/- 20.5bp
Average Position of motif in Background47.9 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGCAGGCCCCGC----
---CAGGCCNNGGCCNN
 A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGCCCCGC
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCCGC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCCGC
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCCGC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGCCCCGC
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGCCCCGC
CACAGCAGGGGG---
 A C G T A C G T A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CAGCAGGCCCCGC----
-----GGCCCCGCCCCC
 A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAGCAGGCCCCGC
----AGGCCTAG-
 A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGCAGGCCCCGC
----AGGCCTNG-
 A G T C C T G A A C T G A G T C G T C A A C T G A C T G A T G C A G T C G A T C A T G C A C T G A G T C
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T