Information for 3-GTGGGAGGTC (Motif 9)

A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C G T A C A C G T T G A C G T A C A G T C C G T A T G A C
p-value:1e-11
log p-value:-2.641e+01
Information Content per bp:1.799
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif130.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets44.7 +/- 26.4bp
Average Position of motif in Background51.3 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTGGGAGGTC-
CGTGGGTGGTCC
 A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

GLIS1/MA0735.1/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GTGGGAGGTC-
GCTTCGTGGGGGGTCT
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T

PB0025.1_Glis2_1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GTGGGAGGTC----
NTNTGGGGGGTCNNNA
 A C G T A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

GLIS3/MA0737.1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGAGGTC
CTTCGTGGGGGGTC
 A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C
T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:forward strand
Alignment:GTGGGAGGTC-
-----AGGTCA
 A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

GLIS2/MA0736.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGAGGTC
CTTCGCGGGGGGTC
 A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C
T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTGGGAGGTC-
---AGRGGTCA
 A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTGGGAGGTC
NGCGTGGGCGGR-
 A C G T A C G T A C G T A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C
A C G T T A C G G A T C A C T G A C G T C T A G A C T G A C T G G A T C C T A G C A T G C T A G A C G T

ZBTB7B/MA0694.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTGGGAGGTC--
TTCGGTGGTCGC
 A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T A C G T
C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTGGGAGGTC-
---TRAGGTCA
 A C T G C G A T A C T G A C T G A C T G T G C A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A