Information for 20-CCYKVSDCAGAGG (Motif 40)

G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G
Reverse Opposite:
A T G C G A T C A C G T A G T C A G C T C T A G G T C A T A G C A G T C T G C A C T A G A T C G C A T G
p-value:1e-7
log p-value:-1.640e+01
Information Content per bp:1.592
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif8.40%
Number of Background Sequences with motif1894.3
Percentage of Background Sequences with motif3.97%
Average Position of motif in Targets48.4 +/- 26.1bp
Average Position of motif in Background49.7 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCYKVSDCAGAGG---
-GTAGGGCAAAGGTCA
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCYKVSDCAGAGG---
--TGGGGCAAAGGTCA
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCYKVSDCAGAGG---
--TAGGGCAAAGGTCA
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCYKVSDCAGAGG---
AAACAGACAAAGGAAT
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCYKVSDCAGAGG---
-AGGGGTCAGAGGTCA
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCYKVSDCAGAGG
---AAAACAAAGG
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCYKVSDCAGAGG
---GGAACAAAGR
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CCYKVSDCAGAGG
-------CACAGN
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCYKVSDCAGAGG---
--GAGGTCAAAGGTCA
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G A C G T A C G T A C G T
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCYKVSDCAGAGG
---ACATCAAAGG
 G T A C T A G C G A T C A C G T T C A G A T C G C A G T G A T C T C G A T C A G G T C A C T A G T A C G
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G