Information for 12-ACTYTSYTRCAGA (Motif 25)

C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G C T C G T A C T A G A T G C C G T A C T A G C G T A A C T G A C G T
p-value:1e-9
log p-value:-2.237e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.2 +/- 28.2bp
Average Position of motif in Background37.0 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----ACTYTSYTRCAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----ACTYTSYTRCAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:3
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ACTYTSYTRCAGA
GHWACAWTGTWDCWA-
 A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A
C T A G G C T A G C A T G C T A G A T C G C T A G C T A C G A T C T A G G C A T C G T A C G A T G A T C G C T A C G T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:ACTYTSYTRCAGA-----
--------CCAGACRSVB
 C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:ACTYTSYTRCAGA--
ANATTTTTGCAANTN
 C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:6
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ACTYTSYTRCAGA
GHTACAWTGTADCHR-
 A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:forward strand
Alignment:ACTYTSYTRCAGA---
--TTTCCTAGAAAGCA
 C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:ACTYTSYTRCAGA--
-----ATGCCAGACN
 C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-ACTYTSYTRCAGA-
CTTTGTTATGCAAAT
 A C G T C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:ACTYTSYTRCAGA
--NTTGATACATT
 C G T A A G T C A C G T A G T C C G A T A T C G A G T C A C G T C T G A G T A C C G T A A C T G C G T A
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T