Information for 6-RGRGCATWCARGA (Motif 12)

C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C T G C G A T G T C A A C G T A C T G A G T C A G C T A G T C A G C T
p-value:1e-11
log p-value:-2.582e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.4 +/- 26.7bp
Average Position of motif in Background58.8 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RGRGCATWCARGA----
---ACATTCATGACACG
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RGRGCATWCARGA-
TAGAANVTTCTAGAA
 A C G T C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A A C G T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF4/MA0771.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RGRGCATWCARGA-
-GAANNTTCTAGAA
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A A C G T
A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--RGRGCATWCARGA
NGTGGGCAT------
 A C G T A C G T C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RGRGCATWCARGA-
-GAACGTTCTAGAA
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A A C G T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RGRGCATWCARGA
-AGCCACTCAAG-
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RGRGCATWCARGA--
CGAAGCACACAAAATA
 A C G T C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:RGRGCATWCARGA
---RCATTCCWGG
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:RGRGCATWCARGA
---RCATTCCWGG
 C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
A C G T A C G T A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----RGRGCATWCARGA
NNNNTTGGGCACNNCN--
 A C G T A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G A G T C C G T A A C G T C G T A A G T C C G T A C T A G A C T G C G T A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T