Information for 8-AGCAGWSAAC (Motif 8)

T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C
Reverse Opposite:
C T A G C G A T A C G T T A G C C G A T T A G C C G A T C T A G A G T C A G C T
p-value:1e-13
log p-value:-3.000e+01
Information Content per bp:1.760
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.77%
Number of Background Sequences with motif336.2
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets50.7 +/- 30.6bp
Average Position of motif in Background46.8 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCAGWSAAC---
CGAAGCACACAAAATA
 A C G T A C G T A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAGWSAAC
-BCAGACWA-
 T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAGWSAAC-
-GCAGTGATTT
 T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGCAGWSAAC--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGCAGWSAAC-
-CCAGACRSVB
 T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGWSAAC----
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCAGWSAAC
AAGCACTTAA-
 A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGWSAAC---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCAGWSAAC
AAAAGTCAA-
 T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGCAGWSAAC--
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C G T T C G A A C T G A G T C C G T A A T C G G C T A A T C G C G T A G C T A A G T C A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C