Information for 19-TTAATGGCGC (Motif 33)

A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C A G T C C G T A A C G T A C G T T C G A C G T A
p-value:1e-6
log p-value:-1.593e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.8 +/- 29.6bp
Average Position of motif in Background53.9 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTAATGGCGC--
-TAATGGCGGNC
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCGC
GTTAATGGCC-
 A C G T A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCGC
TTTAATTGCN-
 A C G T A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTAATGGCGC
GKTAATGR---
 A C G T A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAATGGCGC
CTAATKGV--
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAATGGCGC-----
ATAAGGGCGCGCGAT
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

E2F1/MA0024.3/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTAATGGCGC----
--TTTGGCGCCAAA
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTAATGGCGC-----
ATAAAGGCGCGCGAT
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTAATGGCGC
NTAATTGN--
 A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCGC------
NNNNTTGGCGCCGANNN
 A C G T A C G T A G C T C G T A G T C A A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T