Information for 1-BCAAAGGTCA (Motif 2)

A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
Reverse Opposite:
C G A T T C A G C T G A G T A C A G T C A G C T A G C T C G A T T A C G T G A C
p-value:1e-36
log p-value:-8.390e+01
Information Content per bp:1.633
Number of Target Sequences with motif185.0
Percentage of Target Sequences with motif21.82%
Number of Background Sequences with motif3649.9
Percentage of Background Sequences with motif7.81%
Average Position of motif in Targets49.4 +/- 26.8bp
Average Position of motif in Background49.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:BCAAAGGTCA-
-CAAAGGTCAG
 A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--BCAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--BCAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----BCAAAGGTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--BCAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------BCAAAGGTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.84
Offset:1
Orientation:forward strand
Alignment:BCAAAGGTCA----
-CAAAGGTCAAGGG
 A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----BCAAAGGTCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----BCAAAGGTCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----BCAAAGGTCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G C T A C T G A C T G A A C T G C A T G G A C T A G T C G C T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A