Information for 13-CTGAATGAACAAG (Motif 18)

A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C G T A C G T A G T C G C T A A G C T A C G T A G T C C G T A A T C G
p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.808
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif28.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.6 +/- 27.9bp
Average Position of motif in Background44.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTGAATGAACAAG
ACTATGAATGAATGAT
 A C G T A C G T A C G T A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGAATGAACAAG-----
--NNAGGGACAAGGGCNC
 A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGAATGAACAAG-
NCWRWGTAAACANSV
 A C G T A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxj2/MA0614.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGAATGAACAAG
----GTAAACAA-
 A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G
A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGAATGAACAAG
-TATGTAAACANG
 A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGAATGAACAAG--
AACAAACAACAAGAG
 A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGAATGAACAAG----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTGAATGAACAAG----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTGAATGAACAAG-----
-TCACGGAACAATAGGTG
 A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGAATGAACAAG
NCTAAGTAAACA--
 A C G T A T G C C G A T C T A G G T C A C T G A C G A T A C T G G T C A C G T A T A G C G T C A C G T A A C T G
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T