Information for 5-CAGAGGGCAA (Motif 7)

A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
Reverse Opposite:
A C G T A G C T A T C G A G T C A G T C A G T C A C G T G T A C C A G T A T C G
p-value:1e-14
log p-value:-3.371e+01
Information Content per bp:1.840
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.53%
Number of Background Sequences with motif246.2
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets52.0 +/- 30.7bp
Average Position of motif in Background49.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCAA
CAAAGGTCAG
 A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGGCAA
TAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CAGAGGGCAA
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGAGGGCAA
-TNNGGGCAG
 A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCAA---
CAAAGGTCAAGGG
 A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAGAGGGCAA
TTGCCCTAGGGCAT
 A C G T A C G T A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAGAGGGCAA
-TRAGGTCA-
 A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCAA
TGGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCAA
AACAGATGGC--
 A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGAGGGCAA
CCGCCCAAGGGCAG
 A C G T A C G T A C G T A C G T A T G C G T C A C A T G C G T A C T A G C T A G A C T G A T G C C T G A T G C A
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G