Information for 20-GSTCAKKCAAGKG (Motif 25)

A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G
Reverse Opposite:
A G T C G T A C A G T C A C G T A C G T A C T G G T C A G T A C A C G T A C T G C G T A A T G C A G T C
p-value:1e-10
log p-value:-2.439e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 24.6bp
Average Position of motif in Background71.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GSTCAKKCAAGKG-
---AAGGCAAGTGT
 A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GSTCAKKCAAGKG---
AGGTCATGCAAAGGTCA
 A C G T A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T A C G T A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GSTCAKKCAAGKG----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GSTCAKKCAAGKG-
-----NTCAAGTGG
 A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GSTCAKKCAAGKG--
-----NTCAAGTGGN
 A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GSTCAKKCAAGKG
AGGTCA--------
 A C G T A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GSTCAKKCAAGKG--
GGTCANYTGAGGWCA
 A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G A C G T A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GSTCAKKCAAGKG
TGCTGAGTCA----
 A C G T A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GSTCAKKCAAGKG
--TGAGTCA----
 A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G
A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GSTCAKKCAAGKG
AGRGGTCA--------
 A C G T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A A C T G C A T G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T