Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-117 | -2.716e+02 | 0.0000 | 171.0 | 22.44% | 989.3 | 2.09% | motif file (matrix) |
svg |
2 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-50 | -1.160e+02 | 0.0000 | 236.0 | 30.97% | 5143.6 | 10.86% | motif file (matrix) |
svg |
3 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-35 | -8.275e+01 | 0.0000 | 133.0 | 17.45% | 2324.7 | 4.91% | motif file (matrix) |
svg |
4 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-33 | -7.606e+01 | 0.0000 | 116.0 | 15.22% | 1930.0 | 4.08% | motif file (matrix) |
svg |
5 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-25 | -5.759e+01 | 0.0000 | 297.0 | 38.98% | 10486.7 | 22.14% | motif file (matrix) |
svg |
6 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-22 | -5.171e+01 | 0.0000 | 121.0 | 15.88% | 2762.5 | 5.83% | motif file (matrix) |
svg |
7 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-21 | -5.056e+01 | 0.0000 | 107.0 | 14.04% | 2280.0 | 4.81% | motif file (matrix) |
svg |
8 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-21 | -5.025e+01 | 0.0000 | 102.0 | 13.39% | 2110.6 | 4.46% | motif file (matrix) |
svg |
9 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-19 | -4.386e+01 | 0.0000 | 82.0 | 10.76% | 1595.4 | 3.37% | motif file (matrix) |
svg |
10 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-18 | -4.364e+01 | 0.0000 | 50.0 | 6.56% | 630.0 | 1.33% | motif file (matrix) |
svg |
11 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-17 | -4.008e+01 | 0.0000 | 28.0 | 3.67% | 189.9 | 0.40% | motif file (matrix) |
svg |
12 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-17 | -4.006e+01 | 0.0000 | 136.0 | 17.85% | 3834.9 | 8.10% | motif file (matrix) |
svg |
13 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-16 | -3.779e+01 | 0.0000 | 86.0 | 11.29% | 1919.1 | 4.05% | motif file (matrix) |
svg |
14 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-16 | -3.770e+01 | 0.0000 | 79.0 | 10.37% | 1669.0 | 3.52% | motif file (matrix) |
svg |
15 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-15 | -3.648e+01 | 0.0000 | 26.0 | 3.41% | 182.7 | 0.39% | motif file (matrix) |
svg |
16 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-13 | -3.174e+01 | 0.0000 | 87.0 | 11.42% | 2176.6 | 4.60% | motif file (matrix) |
svg |
17 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-12 | -2.854e+01 | 0.0000 | 31.0 | 4.07% | 376.2 | 0.79% | motif file (matrix) |
svg |
18 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-11 | -2.762e+01 | 0.0000 | 27.0 | 3.54% | 292.8 | 0.62% | motif file (matrix) |
svg |
19 |
| HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer | 1e-11 | -2.554e+01 | 0.0000 | 23.0 | 3.02% | 227.4 | 0.48% | motif file (matrix) |
svg |
20 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-11 | -2.554e+01 | 0.0000 | 67.0 | 8.79% | 1638.6 | 3.46% | motif file (matrix) |
svg |
21 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-10 | -2.306e+01 | 0.0000 | 66.0 | 8.66% | 1698.5 | 3.59% | motif file (matrix) |
svg |
22 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.890e+01 | 0.0000 | 54.0 | 7.09% | 1396.9 | 2.95% | motif file (matrix) |
svg |
23 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-8 | -1.879e+01 | 0.0000 | 43.0 | 5.64% | 979.2 | 2.07% | motif file (matrix) |
svg |
24 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-7 | -1.815e+01 | 0.0000 | 59.0 | 7.74% | 1632.8 | 3.45% | motif file (matrix) |
svg |
25 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.799e+01 | 0.0000 | 136.0 | 17.85% | 5224.3 | 11.03% | motif file (matrix) |
svg |
26 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-7 | -1.752e+01 | 0.0000 | 74.0 | 9.71% | 2307.6 | 4.87% | motif file (matrix) |
svg |
27 |
| Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-7 | -1.699e+01 | 0.0000 | 17.0 | 2.23% | 197.6 | 0.42% | motif file (matrix) |
svg |
28 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.680e+01 | 0.0000 | 63.0 | 8.27% | 1868.1 | 3.94% | motif file (matrix) |
svg |
29 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.660e+01 | 0.0000 | 36.0 | 4.72% | 798.4 | 1.69% | motif file (matrix) |
svg |
30 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-6 | -1.546e+01 | 0.0000 | 50.0 | 6.56% | 1389.0 | 2.93% | motif file (matrix) |
svg |
31 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-6 | -1.490e+01 | 0.0000 | 28.0 | 3.67% | 569.5 | 1.20% | motif file (matrix) |
svg |
32 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-6 | -1.482e+01 | 0.0000 | 12.0 | 1.57% | 110.4 | 0.23% | motif file (matrix) |
svg |
33 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.451e+01 | 0.0000 | 34.0 | 4.46% | 797.8 | 1.68% | motif file (matrix) |
svg |
34 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-6 | -1.405e+01 | 0.0000 | 29.0 | 3.81% | 630.5 | 1.33% | motif file (matrix) |
svg |
35 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-5 | -1.347e+01 | 0.0000 | 42.0 | 5.51% | 1153.6 | 2.44% | motif file (matrix) |
svg |
36 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-5 | -1.320e+01 | 0.0000 | 40.0 | 5.25% | 1084.5 | 2.29% | motif file (matrix) |
svg |
37 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-5 | -1.316e+01 | 0.0000 | 47.0 | 6.17% | 1377.6 | 2.91% | motif file (matrix) |
svg |
38 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.314e+01 | 0.0000 | 52.0 | 6.82% | 1593.6 | 3.37% | motif file (matrix) |
svg |
39 |
| Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.281e+01 | 0.0000 | 36.0 | 4.72% | 941.1 | 1.99% | motif file (matrix) |
svg |
40 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-5 | -1.271e+01 | 0.0000 | 40.0 | 5.25% | 1107.7 | 2.34% | motif file (matrix) |
svg |
41 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.262e+01 | 0.0000 | 34.0 | 4.46% | 870.6 | 1.84% | motif file (matrix) |
svg |
42 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.252e+01 | 0.0000 | 47.0 | 6.17% | 1411.4 | 2.98% | motif file (matrix) |
svg |
43 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.224e+01 | 0.0000 | 38.0 | 4.99% | 1047.9 | 2.21% | motif file (matrix) |
svg |
44 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.220e+01 | 0.0000 | 22.0 | 2.89% | 442.8 | 0.94% | motif file (matrix) |
svg |
45 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-5 | -1.164e+01 | 0.0001 | 21.0 | 2.76% | 425.0 | 0.90% | motif file (matrix) |
svg |
46 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-4 | -1.125e+01 | 0.0001 | 29.0 | 3.81% | 731.9 | 1.55% | motif file (matrix) |
svg |
47 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -1.116e+01 | 0.0001 | 35.0 | 4.59% | 975.7 | 2.06% | motif file (matrix) |
svg |
48 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-4 | -1.101e+01 | 0.0001 | 97.0 | 12.73% | 3906.1 | 8.25% | motif file (matrix) |
svg |
49 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.037e+01 | 0.0002 | 23.0 | 3.02% | 536.6 | 1.13% | motif file (matrix) |
svg |
50 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-4 | -1.030e+01 | 0.0002 | 12.0 | 1.57% | 173.0 | 0.37% | motif file (matrix) |
svg |
51 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-4 | -1.001e+01 | 0.0003 | 53.0 | 6.96% | 1838.4 | 3.88% | motif file (matrix) |
svg |
52 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-4 | -9.683e+00 | 0.0004 | 60.0 | 7.87% | 2194.6 | 4.63% | motif file (matrix) |
svg |
53 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-4 | -9.576e+00 | 0.0005 | 8.0 | 1.05% | 82.3 | 0.17% | motif file (matrix) |
svg |
54 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-4 | -9.454e+00 | 0.0005 | 30.0 | 3.94% | 851.5 | 1.80% | motif file (matrix) |
svg |
55 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-3 | -9.013e+00 | 0.0008 | 49.0 | 6.43% | 1724.9 | 3.64% | motif file (matrix) |
svg |
56 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.623e+00 | 0.0012 | 21.0 | 2.76% | 526.7 | 1.11% | motif file (matrix) |
svg |
57 |
| Sp1(Zf)/Promoter/Homer | 1e-3 | -8.244e+00 | 0.0017 | 17.0 | 2.23% | 389.4 | 0.82% | motif file (matrix) |
svg |
58 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-3 | -7.984e+00 | 0.0021 | 6.0 | 0.79% | 56.6 | 0.12% | motif file (matrix) |
svg |
59 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.981e+00 | 0.0021 | 8.0 | 1.05% | 105.0 | 0.22% | motif file (matrix) |
svg |
60 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.738e+00 | 0.0026 | 80.0 | 10.50% | 3385.9 | 7.15% | motif file (matrix) |
svg |
61 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.464e+00 | 0.0034 | 20.0 | 2.62% | 535.4 | 1.13% | motif file (matrix) |
svg |
62 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-3 | -7.400e+00 | 0.0036 | 7.0 | 0.92% | 87.6 | 0.18% | motif file (matrix) |
svg |
63 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.036e+00 | 0.0051 | 36.0 | 4.72% | 1262.2 | 2.67% | motif file (matrix) |
svg |
64 |
| GFY(?)/Promoter/Homer | 1e-2 | -6.556e+00 | 0.0081 | 8.0 | 1.05% | 130.6 | 0.28% | motif file (matrix) |
svg |
65 |
| VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-2 | -6.533e+00 | 0.0081 | 14.0 | 1.84% | 338.6 | 0.71% | motif file (matrix) |
svg |
66 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.509e+00 | 0.0082 | 36.0 | 4.72% | 1302.8 | 2.75% | motif file (matrix) |
svg |
67 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.230e+00 | 0.0107 | 26.0 | 3.41% | 858.2 | 1.81% | motif file (matrix) |
svg |
68 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.838e+00 | 0.0156 | 27.0 | 3.54% | 930.5 | 1.96% | motif file (matrix) |
svg |
69 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.745e+00 | 0.0169 | 39.0 | 5.12% | 1512.5 | 3.19% | motif file (matrix) |
svg |
70 |
| FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-2 | -5.737e+00 | 0.0169 | 25.0 | 3.28% | 845.0 | 1.78% | motif file (matrix) |
svg |
71 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.732e+00 | 0.0169 | 33.0 | 4.33% | 1221.7 | 2.58% | motif file (matrix) |
svg |
72 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.694e+00 | 0.0170 | 187.0 | 24.54% | 9679.9 | 20.44% | motif file (matrix) |
svg |
73 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-2 | -5.516e+00 | 0.0200 | 42.0 | 5.51% | 1683.3 | 3.55% | motif file (matrix) |
svg |
74 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.426e+00 | 0.0217 | 21.0 | 2.76% | 685.0 | 1.45% | motif file (matrix) |
svg |
75 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.328e+00 | 0.0236 | 15.0 | 1.97% | 429.9 | 0.91% | motif file (matrix) |
svg |
76 |
| STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-2 | -5.293e+00 | 0.0241 | 19.0 | 2.49% | 603.3 | 1.27% | motif file (matrix) |
svg |
77 |
| Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-2 | -5.220e+00 | 0.0256 | 35.0 | 4.59% | 1363.9 | 2.88% | motif file (matrix) |
svg |
78 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-2 | -5.153e+00 | 0.0270 | 22.0 | 2.89% | 747.0 | 1.58% | motif file (matrix) |
svg |
79 |
| Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer | 1e-2 | -5.027e+00 | 0.0302 | 31.0 | 4.07% | 1184.3 | 2.50% | motif file (matrix) |
svg |
80 |
| NFY(CCAAT)/Promoter/Homer | 1e-2 | -4.947e+00 | 0.0323 | 45.0 | 5.91% | 1896.1 | 4.00% | motif file (matrix) |
svg |
81 |
| IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-2 | -4.937e+00 | 0.0323 | 9.0 | 1.18% | 207.4 | 0.44% | motif file (matrix) |
svg |
82 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -4.842e+00 | 0.0350 | 14.0 | 1.84% | 411.0 | 0.87% | motif file (matrix) |
svg |
83 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.821e+00 | 0.0353 | 24.0 | 3.15% | 864.3 | 1.83% | motif file (matrix) |
svg |
84 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -4.766e+00 | 0.0369 | 125.0 | 16.40% | 6312.0 | 13.33% | motif file (matrix) |
svg |
85 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.726e+00 | 0.0379 | 17.0 | 2.23% | 548.2 | 1.16% | motif file (matrix) |
svg |
86 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.666e+00 | 0.0398 | 62.0 | 8.14% | 2828.9 | 5.97% | motif file (matrix) |
svg |
87 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -4.665e+00 | 0.0398 | 26.0 | 3.41% | 972.8 | 2.05% | motif file (matrix) |
svg |
88 |
| RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-2 | -4.618e+00 | 0.0404 | 10.0 | 1.31% | 257.3 | 0.54% | motif file (matrix) |
svg |
89 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-2 | -4.618e+00 | 0.0404 | 10.0 | 1.31% | 257.2 | 0.54% | motif file (matrix) |
svg |