Information for 18-CTCTTGCCAA (Motif 50)

G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A
Reverse Opposite:
A C G T C G A T C T A G A C T G T G A C C G T A G T C A C A T G C T G A A C T G
p-value:1e-6
log p-value:-1.567e+01
Information Content per bp:1.775
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif298.7
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets42.3 +/- 29.6bp
Average Position of motif in Background51.4 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CTCTTGCCAA--
--GGTGCCAAGT
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTCTTGCCAA-
---TTGCCAAG
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTCTTGCCAA-
--CGTGCCAAG
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CTCTTGCCAA
----TGCCAA
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGCCAA
NNACTTGCCTT
 A C G T G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTCTTGCCAA--
---ATGCCAACC
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCTTGCCAA--
---ATGCCCACC
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCTTGCCAA------
ACTATGCCAACCTACC
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCTTGCCAA---
--ATTGCACAATA
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T A C G T
A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCTTGCCAA--
CTGTTGCTAGGS
 G T A C A G C T G T A C A C G T C G A T A C T G A G T C A G T C C G T A G T C A A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G