Information for 1-AGKBCAAAGTYCA (Motif 1)

C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
Reverse Opposite:
C G A T C T A G T C A G G T C A G T A C G A C T A G C T C G A T C T A G T C G A G T A C G T A C G A C T
p-value:1e-173
log p-value:-3.999e+02
Information Content per bp:1.573
Number of Target Sequences with motif270.0
Percentage of Target Sequences with motif35.43%
Number of Background Sequences with motif1874.2
Percentage of Background Sequences with motif3.96%
Average Position of motif in Targets51.7 +/- 20.4bp
Average Position of motif in Background49.9 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.98
Offset:-2
Orientation:forward strand
Alignment:--AGKBCAAAGTYCA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.98
Offset:-3
Orientation:forward strand
Alignment:---AGKBCAAAGTYCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA--
GGGGTCAAAGTCCAAT
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GGGGTCAAAGGTCA
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
TAGGGCAAAGGTCA
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GAGGTCAAAGGTCA
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GGGGTCAAAGGTCA
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GAGGTCAAAGGTCA
 A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--AGKBCAAAGTYCA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AGKBCAAAGTYCA----
-GGCAAAAGTCCAATAA
 C T G A C A T G C A G T A G C T G A T C G C T A T C G A C T G A C A T G A C G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T