Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-107 | -2.477e+02 | 0.0000 | 161.0 | 20.85% | 958.7 | 2.04% | motif file (matrix) |
svg |
2 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-50 | -1.155e+02 | 0.0000 | 243.0 | 31.48% | 5326.4 | 11.31% | motif file (matrix) |
svg |
3 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-41 | -9.523e+01 | 0.0000 | 145.0 | 18.78% | 2387.0 | 5.07% | motif file (matrix) |
svg |
4 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-38 | -8.788e+01 | 0.0000 | 128.0 | 16.58% | 2014.8 | 4.28% | motif file (matrix) |
svg |
5 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-34 | -7.921e+01 | 0.0000 | 45.0 | 5.83% | 204.7 | 0.43% | motif file (matrix) |
svg |
6 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-29 | -6.883e+01 | 0.0000 | 308.0 | 39.90% | 10167.4 | 21.58% | motif file (matrix) |
svg |
7 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-27 | -6.293e+01 | 0.0000 | 46.0 | 5.96% | 320.2 | 0.68% | motif file (matrix) |
svg |
8 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-25 | -5.859e+01 | 0.0000 | 120.0 | 15.54% | 2460.4 | 5.22% | motif file (matrix) |
svg |
9 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-24 | -5.629e+01 | 0.0000 | 103.0 | 13.34% | 1939.3 | 4.12% | motif file (matrix) |
svg |
10 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-24 | -5.603e+01 | 0.0000 | 107.0 | 13.86% | 2081.4 | 4.42% | motif file (matrix) |
svg |
11 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-23 | -5.458e+01 | 0.0000 | 35.0 | 4.53% | 199.9 | 0.42% | motif file (matrix) |
svg |
12 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-23 | -5.390e+01 | 0.0000 | 87.0 | 11.27% | 1480.6 | 3.14% | motif file (matrix) |
svg |
13 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-18 | -4.365e+01 | 0.0000 | 142.0 | 18.39% | 3850.4 | 8.17% | motif file (matrix) |
svg |
14 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-18 | -4.162e+01 | 0.0000 | 50.0 | 6.48% | 650.7 | 1.38% | motif file (matrix) |
svg |
15 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-17 | -4.087e+01 | 0.0000 | 85.0 | 11.01% | 1752.2 | 3.72% | motif file (matrix) |
svg |
16 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-15 | -3.635e+01 | 0.0000 | 75.0 | 9.72% | 1538.4 | 3.27% | motif file (matrix) |
svg |
17 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-13 | -3.087e+01 | 0.0000 | 85.0 | 11.01% | 2092.1 | 4.44% | motif file (matrix) |
svg |
18 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-10 | -2.367e+01 | 0.0000 | 64.0 | 8.29% | 1565.3 | 3.32% | motif file (matrix) |
svg |
19 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-9 | -2.282e+01 | 0.0000 | 27.0 | 3.50% | 356.0 | 0.76% | motif file (matrix) |
svg |
20 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-9 | -2.278e+01 | 0.0000 | 64.0 | 8.29% | 1600.1 | 3.40% | motif file (matrix) |
svg |
21 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-9 | -2.155e+01 | 0.0000 | 60.0 | 7.77% | 1495.8 | 3.18% | motif file (matrix) |
svg |
22 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-9 | -2.130e+01 | 0.0000 | 76.0 | 9.84% | 2149.2 | 4.56% | motif file (matrix) |
svg |
23 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-9 | -2.083e+01 | 0.0000 | 41.0 | 5.31% | 827.8 | 1.76% | motif file (matrix) |
svg |
24 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-8 | -2.067e+01 | 0.0000 | 47.0 | 6.09% | 1042.2 | 2.21% | motif file (matrix) |
svg |
25 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-8 | -1.970e+01 | 0.0000 | 39.0 | 5.05% | 792.6 | 1.68% | motif file (matrix) |
svg |
26 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-8 | -1.947e+01 | 0.0000 | 42.0 | 5.44% | 903.1 | 1.92% | motif file (matrix) |
svg |
27 |
| HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer | 1e-7 | -1.760e+01 | 0.0000 | 18.0 | 2.33% | 209.5 | 0.44% | motif file (matrix) |
svg |
28 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-7 | -1.709e+01 | 0.0000 | 109.0 | 14.12% | 3892.9 | 8.26% | motif file (matrix) |
svg |
29 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-7 | -1.687e+01 | 0.0000 | 72.0 | 9.33% | 2215.2 | 4.70% | motif file (matrix) |
svg |
30 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.664e+01 | 0.0000 | 53.0 | 6.87% | 1430.0 | 3.04% | motif file (matrix) |
svg |
31 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-6 | -1.549e+01 | 0.0000 | 50.0 | 6.48% | 1361.9 | 2.89% | motif file (matrix) |
svg |
32 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.483e+01 | 0.0000 | 96.0 | 12.44% | 3450.8 | 7.32% | motif file (matrix) |
svg |
33 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.482e+01 | 0.0000 | 49.0 | 6.35% | 1352.4 | 2.87% | motif file (matrix) |
svg |
34 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.448e+01 | 0.0000 | 25.0 | 3.24% | 471.4 | 1.00% | motif file (matrix) |
svg |
35 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.422e+01 | 0.0000 | 47.0 | 6.09% | 1299.6 | 2.76% | motif file (matrix) |
svg |
36 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.394e+01 | 0.0000 | 36.0 | 4.66% | 878.5 | 1.86% | motif file (matrix) |
svg |
37 |
| Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-6 | -1.392e+01 | 0.0000 | 14.0 | 1.81% | 164.7 | 0.35% | motif file (matrix) |
svg |
38 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.350e+01 | 0.0000 | 27.0 | 3.50% | 567.0 | 1.20% | motif file (matrix) |
svg |
39 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.344e+01 | 0.0000 | 51.0 | 6.61% | 1505.1 | 3.19% | motif file (matrix) |
svg |
40 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-5 | -1.324e+01 | 0.0000 | 11.0 | 1.42% | 104.0 | 0.22% | motif file (matrix) |
svg |
41 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-5 | -1.309e+01 | 0.0000 | 37.0 | 4.79% | 951.7 | 2.02% | motif file (matrix) |
svg |
42 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-5 | -1.295e+01 | 0.0000 | 41.0 | 5.31% | 1116.7 | 2.37% | motif file (matrix) |
svg |
43 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.222e+01 | 0.0000 | 36.0 | 4.66% | 949.8 | 2.02% | motif file (matrix) |
svg |
44 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.216e+01 | 0.0000 | 29.0 | 3.76% | 683.9 | 1.45% | motif file (matrix) |
svg |
45 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-5 | -1.210e+01 | 0.0000 | 25.0 | 3.24% | 540.4 | 1.15% | motif file (matrix) |
svg |
46 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-5 | -1.209e+01 | 0.0000 | 45.0 | 5.83% | 1324.6 | 2.81% | motif file (matrix) |
svg |
47 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.205e+01 | 0.0000 | 56.0 | 7.25% | 1803.7 | 3.83% | motif file (matrix) |
svg |
48 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-5 | -1.195e+01 | 0.0000 | 39.0 | 5.05% | 1082.3 | 2.30% | motif file (matrix) |
svg |
49 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-5 | -1.179e+01 | 0.0001 | 60.0 | 7.77% | 1999.0 | 4.24% | motif file (matrix) |
svg |
50 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.176e+01 | 0.0001 | 33.0 | 4.27% | 851.8 | 1.81% | motif file (matrix) |
svg |
51 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.176e+01 | 0.0001 | 129.0 | 16.71% | 5382.5 | 11.43% | motif file (matrix) |
svg |
52 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 44.0 | 5.70% | 1310.7 | 2.78% | motif file (matrix) |
svg |
53 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-4 | -1.097e+01 | 0.0001 | 55.0 | 7.12% | 1829.1 | 3.88% | motif file (matrix) |
svg |
54 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -1.077e+01 | 0.0001 | 34.0 | 4.40% | 935.9 | 1.99% | motif file (matrix) |
svg |
55 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.669e+00 | 0.0004 | 21.0 | 2.72% | 478.3 | 1.02% | motif file (matrix) |
svg |
56 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-3 | -8.947e+00 | 0.0008 | 23.0 | 2.98% | 580.1 | 1.23% | motif file (matrix) |
svg |
57 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -8.807e+00 | 0.0010 | 18.0 | 2.33% | 399.3 | 0.85% | motif file (matrix) |
svg |
58 |
| FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-3 | -8.630e+00 | 0.0011 | 31.0 | 4.02% | 919.7 | 1.95% | motif file (matrix) |
svg |
59 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-3 | -8.630e+00 | 0.0011 | 49.0 | 6.35% | 1721.9 | 3.66% | motif file (matrix) |
svg |
60 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-3 | -8.381e+00 | 0.0014 | 6.0 | 0.78% | 51.7 | 0.11% | motif file (matrix) |
svg |
61 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-3 | -7.438e+00 | 0.0035 | 25.0 | 3.24% | 730.1 | 1.55% | motif file (matrix) |
svg |
62 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-3 | -7.056e+00 | 0.0051 | 46.0 | 5.96% | 1706.5 | 3.62% | motif file (matrix) |
svg |
63 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.038e+00 | 0.0051 | 38.0 | 4.92% | 1331.7 | 2.83% | motif file (matrix) |
svg |
64 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-3 | -6.961e+00 | 0.0054 | 16.0 | 2.07% | 391.9 | 0.83% | motif file (matrix) |
svg |
65 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.847e+00 | 0.0059 | 18.0 | 2.33% | 473.6 | 1.01% | motif file (matrix) |
svg |
66 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.613e+00 | 0.0074 | 7.0 | 0.91% | 98.9 | 0.21% | motif file (matrix) |
svg |
67 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.599e+00 | 0.0074 | 20.0 | 2.59% | 566.0 | 1.20% | motif file (matrix) |
svg |
68 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.516e+00 | 0.0079 | 63.0 | 8.16% | 2597.4 | 5.51% | motif file (matrix) |
svg |
69 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.510e+00 | 0.0079 | 29.0 | 3.76% | 958.5 | 2.03% | motif file (matrix) |
svg |
70 |
| Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.484e+00 | 0.0079 | 28.0 | 3.63% | 915.9 | 1.94% | motif file (matrix) |
svg |
71 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -6.353e+00 | 0.0089 | 9.0 | 1.17% | 163.7 | 0.35% | motif file (matrix) |
svg |
72 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -6.264e+00 | 0.0096 | 6.0 | 0.78% | 77.1 | 0.16% | motif file (matrix) |
svg |
73 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.218e+00 | 0.0099 | 25.0 | 3.24% | 799.8 | 1.70% | motif file (matrix) |
svg |
74 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.046e+00 | 0.0116 | 190.0 | 24.61% | 9595.2 | 20.37% | motif file (matrix) |
svg |
75 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -5.970e+00 | 0.0124 | 87.0 | 11.27% | 3913.4 | 8.31% | motif file (matrix) |
svg |
76 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.953e+00 | 0.0124 | 30.0 | 3.89% | 1042.2 | 2.21% | motif file (matrix) |
svg |
77 |
| PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-2 | -5.793e+00 | 0.0144 | 103.0 | 13.34% | 4798.7 | 10.19% | motif file (matrix) |
svg |
78 |
| Sp1(Zf)/Promoter/Homer | 1e-2 | -5.531e+00 | 0.0185 | 18.0 | 2.33% | 537.0 | 1.14% | motif file (matrix) |
svg |
79 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -5.400e+00 | 0.0208 | 6.0 | 0.78% | 92.3 | 0.20% | motif file (matrix) |
svg |
80 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -5.309e+00 | 0.0225 | 38.0 | 4.92% | 1476.5 | 3.13% | motif file (matrix) |
svg |
81 |
| GFY(?)/Promoter/Homer | 1e-2 | -5.283e+00 | 0.0228 | 7.0 | 0.91% | 125.7 | 0.27% | motif file (matrix) |
svg |
82 |
| NFY(CCAAT)/Promoter/Homer | 1e-2 | -5.032e+00 | 0.0290 | 45.0 | 5.83% | 1852.2 | 3.93% | motif file (matrix) |
svg |
83 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -4.998e+00 | 0.0296 | 26.0 | 3.37% | 928.9 | 1.97% | motif file (matrix) |
svg |
84 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -4.934e+00 | 0.0312 | 116.0 | 15.03% | 5662.0 | 12.02% | motif file (matrix) |
svg |
85 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-2 | -4.918e+00 | 0.0313 | 23.0 | 2.98% | 795.7 | 1.69% | motif file (matrix) |
svg |
86 |
| Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer | 1e-2 | -4.831e+00 | 0.0338 | 32.0 | 4.15% | 1228.9 | 2.61% | motif file (matrix) |
svg |
87 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -4.792e+00 | 0.0347 | 12.0 | 1.55% | 324.5 | 0.69% | motif file (matrix) |
svg |