Information for 1-AGKBCAAAGTYCA (Motif 1)

C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
Reverse Opposite:
C A G T C T A G T C G A G T C A G A T C G A C T A G C T C A G T C T A G T C G A G T A C G A T C G A C T
p-value:1e-160
log p-value:-3.691e+02
Information Content per bp:1.564
Number of Target Sequences with motif283.0
Percentage of Target Sequences with motif36.66%
Number of Background Sequences with motif2355.7
Percentage of Background Sequences with motif5.00%
Average Position of motif in Targets48.4 +/- 19.9bp
Average Position of motif in Background49.1 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.98
Offset:-2
Orientation:forward strand
Alignment:--AGKBCAAAGTYCA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.97
Offset:-3
Orientation:forward strand
Alignment:---AGKBCAAAGTYCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA--
GGGGTCAAAGTCCAAT
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
TAGGGCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--AGKBCAAAGTYCA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GGGGTCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGKBCAAAGTYCA
GGGGTCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AGKBCAAAGTYCA
TGGGGCAAAGGTCA
 A C G T C T G A C T A G C A T G A G C T G A T C G T C A T C G A C T G A C A T G C A G T A G C T G A T C G T C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A