Information for 8-RCTGCCTGCCAGGCYY (Motif 20)

T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
Reverse Opposite:
T C A G C T A G A T C G A G T C G T A C A C G T A C T G A T C G T A G C T C G A C A T G T A C G T A G C C G T A A T C G A G C T
p-value:1e-7
log p-value:-1.777e+01
Information Content per bp:1.625
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.43%
Number of Background Sequences with motif734.8
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets50.1 +/- 26.1bp
Average Position of motif in Background49.0 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--RCTGCCTGCCAGGCYY
TGGCAGNCTGCCAG----
 A C G T A C G T T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:RCTGCCTGCCAGGCYY
-----TTGCCAAG---
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RCTGCCTGCCAGGCYY-
--TCCCAGMCRAGCCCC
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C A C G T
A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RCTGCCTGCCAGGCYY
--TGAGTGACAGSC--
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RCTGCCTGCCAGGCYY
--TGCCCTNAGGGCA-
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RCTGCCTGCCAGGCYY
--TGCCCTNAGGGCA-
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RCTGCCTGCCAGGCYY
--TGCCCNNAGGGCA-
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RCTGCCTGCCAGGCYY-
---ACATGCCCGGGCAT
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C A C G T
A C G T A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RCTGCCTGCCAGGCYY
-----CTGCCCGCA--
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RCTGCCTGCCAGGCYY
----CGTGCCAAG---
 T C G A T A G C G C A T A T C G A T G C G T A C A G C T A T C G T A G C A G T C T G C A A C T G A C T G T A G C G A T C A G T C
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T