Information for 2-TGCCABCTRGTGG (Motif 3)

A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
Reverse Opposite:
G T A C G T A C G T C A A T G C G A C T C T G A C T A G T C G A A C G T A C T G A T C G G T A C C T G A
p-value:1e-30
log p-value:-7.118e+01
Information Content per bp:1.649
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.09%
Number of Background Sequences with motif188.0
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets56.0 +/- 23.4bp
Average Position of motif in Background51.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----TGCCABCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCCABCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.86
Offset:-6
Orientation:forward strand
Alignment:------TGCCABCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGCCABCTRGTGG
ATGCCAACC-----
 A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCCABCTRGTGG
-GCCATCTGTT--
 A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCCABCTRGTGG
CGTGCCAAG------
 A C G T A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCCABCTRGTGG
ACTATGCCAACCTACC-
 A C G T A C G T A C G T A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCCABCTRGTGG
TGCCAA-------
 A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCABCTRGTGG
ATGCCCACC-----
 A C G T A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCCABCTRGTGG
-GCCAGCTGBTNB
 A G C T A C T G A T G C A G T C T G C A A G C T A G T C G A C T C T A G T A C G C A G T A C T G C A T G
A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C