Information for 3-SCAAAGTTCA (Motif 2)

A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
Reverse Opposite:
C G A T C T A G C T G A G T C A G T A C G A C T G A C T C A G T T C A G T A G C
p-value:1e-42
log p-value:-9.792e+01
Information Content per bp:1.598
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif16.48%
Number of Background Sequences with motif1883.9
Percentage of Background Sequences with motif4.07%
Average Position of motif in Targets51.5 +/- 25.4bp
Average Position of motif in Background50.3 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.89
Offset:-5
Orientation:forward strand
Alignment:-----SCAAAGTTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.88
Offset:-6
Orientation:forward strand
Alignment:------SCAAAGTTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:SCAAAGTTCA-
-CAAAGGTCAG
 A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--SCAAAGTTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--SCAAAGTTCA
ANGNAAAGGTCA
 A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--SCAAAGTTCA----
GGCAAAAGTCCAATAA
 A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--SCAAAGTTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----SCAAAGTTCA--
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----SCAAAGTTCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----SCAAAGTTCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T G A C T G A C A T G C A G T G A C T G A T C G C T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A