Information for 12-CTTGCCATGTAAA (Motif 17)

A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T C G A T G T C A G A T C C G T A C G A T A C T G A C T G A G T C C G T A C G T A A C T G
p-value:1e-10
log p-value:-2.430e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 27.8bp
Average Position of motif in Background39.7 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTTGCCATGTAAA--
-TTGCCATGGCAACC
 A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTGCCATGTAAA--
-TTGCCATGGCAACN
 A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCCATGTAAA
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTGCCATGTAAA-
GTTGCCATGGNAAC
 A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTTGCCATGTAAA--
CGTTGCCATGGCAACG
 A C G T A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTTGCCATGTAAA--
GTTGCCATGGCAACM
 A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGCCATGTAAA--
CGTTGCCATGGCAACG
 A C G T A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGCCATGTAAA---
GTTGCCATGGCAACCG
 A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGCCATGTAAA--
CGTTGCCATGGCAACG
 A C G T A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCCATGTAAA-
CATTGTTATGCAAAT
 A C G T A G T C A C G T A C G T A C T G A G T C G T A C C G T A C G A T C T A G A C G T C G T A C G T A C G T A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T