Information for 5-GAGATCAGCC (Motif 5)

A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
Reverse Opposite:
C T A G C T A G G A T C A C G T A T C G G T C A A C G T A T G C G C A T T G A C
p-value:1e-16
log p-value:-3.813e+01
Information Content per bp:1.656
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif11.30%
Number of Background Sequences with motif1982.8
Percentage of Background Sequences with motif4.20%
Average Position of motif in Targets53.8 +/- 28.2bp
Average Position of motif in Background50.1 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGATCAGCC
AGRGGTCA---
 A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGATCAGCC
ATGACGTCATCN
 A C G T A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T C G A G C A T A C T G C T G A A G T C T C A G G A C T G T A C C G T A A G C T A G T C G A T C

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAGATCAGCC----
---GTCAGCANNTN
 A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GAGATCAGCC
-----CAGCC
 A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGATCAGCC
TRAGGTCA---
 A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGATCAGCC
CAGATAAGGN
 A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAGATCAGCC--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGATCAGCC
NAGATAAGNN
 A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata4/MA0482.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGATCAGCC
NNGAGATAAGA-
 A C G T A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGATCAGCC
NVAGATAAGR-
 A C G T A C T G C G T A T A C G T G C A C A G T T A G C T G C A C T A G G A T C G A T C
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A A C G T