Information for 10-AACAATGGCAGGR (Motif 9)

T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
Reverse Opposite:
A G T C A G T C G A T C C G A T A C T G A G T C A T G C C G T A G C A T C G A T T A C G G C A T A C G T
p-value:1e-12
log p-value:-2.955e+01
Information Content per bp:1.673
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif158.5
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets54.8 +/- 27.3bp
Average Position of motif in Background53.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGCAGGR
VRAACAATGG-----
 A C G T A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGCAGGR
GAACAATGG-----
 A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGCAGGR
GAACAATGGN----
 A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AACAATGGCAGGR
RAACAATGGN----
 A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AACAATGGCAGGR
AATGAACAATGGAATT-
 A C G T A C G T A C G T A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGCAGGR
NAACAAT-------
 A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGCAGGR
AAAACAATGG-----
 A C G T A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AACAATGGCAGGR
AACAAAGG-----
 T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AACAATGGCAGGR
TCACGGAACAATAGGTG--
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACAATGGCAGGR--
AACAATGGTAGTGTT
 T G C A C G T A A T G C C G T A C G T A A C G T A T C G T C A G G T A C C G T A C T A G A C T G C T A G A C G T A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T