Information for 3-NCARAGKNCA (Motif 3)

C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
Reverse Opposite:
G C A T C A T G T A C G G T C A T G A C G A C T A G C T C A G T C T A G A G T C
p-value:1e-44
log p-value:-1.031e+02
Information Content per bp:1.461
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif14.89%
Number of Background Sequences with motif1436.5
Percentage of Background Sequences with motif3.05%
Average Position of motif in Targets53.5 +/- 24.4bp
Average Position of motif in Background49.0 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----NCARAGKNCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------NCARAGKNCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--NCARAGKNCA----
GGCAAAAGTCCAATAA
 A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:NCARAGKNCA-
-CAAAGGTCAG
 C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----NCARAGKNCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--NCARAGKNCA----
TCTCAAAGGTCACCTG
 A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----NCARAGKNCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----NCARAGKNCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--NCARAGKNCA----
TCTCAAAGGTCACGAG
 A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--NCARAGKNCA
ANGNAAAGGTCA
 A C G T A C G T C T A G G A T C G T C A T C G A C T G A A C T G C A G T A T G C G T A C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A