Information for 16-GCCHGCVVGGCAG (Motif 19)

A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C G T A C A G T C A C T G A C T G A G T C C G T A C T A G A C T G A G T C
p-value:1e-6
log p-value:-1.397e+01
Information Content per bp:1.857
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.4 +/- 22.6bp
Average Position of motif in Background46.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCHGCVVGGCAG
TGCCCTNAGGGCA-
 A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCHGCVVGGCAG
TGCCCNNAGGGCA-
 A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCCHGCVVGGCAG
TGCCCTNAGGGCA-
 A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCHGCVVGGCAG
TGGCAGNCTGCCAG
 A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCCHGCVVGGCAG
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCCHGCVVGGCAG
----TNNGGGCAG
 A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCHGCVVGGCAG
TCNCCTGCTGNGNNN
 A C G T A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCHGCVVGGCAG
TNTCCTGCTGTGNNG
 A C G T A C G T A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCCHGCVVGGCAG
----NGTGGGCAT
 A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCCHGCVVGGCAG-------
----NNNTGGCAGTTGGTNN
 A C T G A G T C A G T C G A C T A C T G A G T C T A G C T C A G A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G