Information for 1-YGCTGTCCAV (Motif 3)

G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
Reverse Opposite:
A C G T A C G T T A C G T A C G G C T A T A G C C T G A A T C G T A G C C T A G
p-value:1e-32
log p-value:-7.386e+01
Information Content per bp:1.454
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif10.32%
Number of Background Sequences with motif1017.1
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets50.9 +/- 20.3bp
Average Position of motif in Background50.8 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:YGCTGTCCAV
-GCTGTG---
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:YGCTGTCCAV--
--CTGTTCCTGG
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A A C G T A C G T
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--YGCTGTCCAV---------
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--YGCTGTCCAV--------
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YGCTGTCCAV
-GCTGTCAA-
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YGCTGTCCAV
TKCTGTTCCA
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:YGCTGTCCAV
---TGACCT-
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:YGCTGTCCAV
NGCTN-----
 G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----YGCTGTCCAV
AATTTGCTGAC---
 A C G T A C G T A C G T A C G T G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----YGCTGTCCAV---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T G A T C A T C G T A G C G A C T A T C G C G A T A T G C A T G C T G C A T G C A A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C