Information for 7-AGTCAASCTKSWYCCA (Motif 17)

G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G C T G A C G A T A T C G G T A C C G T A A C T G A T C G A C G T A C G T A C T G C G T A A G T C A C G T
p-value:1e-10
log p-value:-2.425e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 25.3bp
Average Position of motif in Background55.6 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTCAASCTKSWYCCA
AAAAGTCAA----------
 A C G T A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGTCAASCTKSWYCCA
---CAAGCTT------
 G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAASCTKSWYCCA
SCAGYCADGCATGAC---
 A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAASCTKSWYCCA
TGAGTCA-----------
 A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGTCAASCTKSWYCCA
-GTCACGCTCNCTGA-
 G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGTCAASCTKSWYCCA
GCAGCCAAGCGTGACN--
 A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGTCAASCTKSWYCCA
NGCANTCATGCGTGACG--
 A C G T A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGTCAASCTKSWYCCA
TGCAGTCATGCGTGACG--
 A C G T A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGTCAASCTKSWYCCA
AGTCACGC--------
 G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAASCTKSWYCCA
CCTGTCAA----------
 A C G T A C G T G T C A A C T G A C G T G T A C G T C A C G T A A T G C A G T C A C G T A C T G T A G C G C A T A G C T A G T C A G T C G T C A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T