Information for 9-CAGCCAATGG (Motif 13)

G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
Reverse Opposite:
G T A C A T G C G T C A A G C T A G C T A C T G A T C G A G T C A C G T C A T G
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.805
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif7.24%
Number of Background Sequences with motif1267.3
Percentage of Background Sequences with motif2.66%
Average Position of motif in Targets53.1 +/- 27.3bp
Average Position of motif in Background51.7 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAGCCAATGG-
-AGCCAATCGG
 G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATGG
BCAGACWA---
 A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATGG
ACTAGCCAATCA
 A C G T A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAATGG
CACAGN------
 A C G T A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCAATGG
CAGCC-----
 G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAATGG
NACAGGAAAT--
 A C G T A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATGG
-TGCCAA---
 G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATGG---
CTCACACAATGGCGC
 A C G T A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGCCAATGG
VRAACAATGG
 G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATGG
CGTGCCAAG--
 A C G T G T A C C G T A A C T G T A G C G T A C T C G A C T G A A C G T T A C G C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T