Information for 3-CTGGTGCTCTGCTGCC (Motif 6)

A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
Reverse Opposite:
A C T G A C T G G T A C G T C A A T C G A T G C G T C A A T C G C G T A A C T G A G T C C G T A A T G C A G T C C G T A C T A G
p-value:1e-13
log p-value:-3.032e+01
Information Content per bp:1.828
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 13.0bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGGTGCTCTGCTGCC
CTGTTGCTAGGS----
 A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTGCTCTGCTGCC
NCCGTTGCTANGNGN--
 A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTGCTCTGCTGCC
NNCGTTGCTATGGNN--
 A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTGCTCTGCTGCC
TNTCCTGCTGTGNNG--
 A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGGTGCTCTGCTGCC
-KGTTGCTAGGMAACA
 A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTGCTCTGCTGCC
NNTCCTGCTGTGNNN--
 A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CTGGTGCTCTGCTGCC--
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTGGTGCTCTGCTGCC
CCCCCTGCTGTG-----
 A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTGCTCTGCTGCC
NNANTGGTGGTCTTNNN--
 A C G T A C G T A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTGCTCTGCTGCC
NNCAGGTGTN--------
 A C G T A C G T A G T C A C G T A C T G A T C G A C G T A C T G A G T C A C G T T A G C A C G T A T C G A T G C A C G T A C T G T A G C A G T C
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T