Information for 2-CGCCATTTTT (Motif 9)

A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
Reverse Opposite:
T C G A T C G A T G C A C T G A T C G A C A G T C A T G A C T G G T A C T C A G
p-value:1e-9
log p-value:-2.154e+01
Information Content per bp:1.666
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif943.1
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets46.2 +/- 27.5bp
Average Position of motif in Background49.0 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATTTTT
GCNGCCATCTTG
 A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CGCCATTTTT
GTCCGCCATTA--
 A C G T A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATTTTT
GCCGCCATCTTG
 A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

E2F3/MA0469.2/Jaspar

Match Rank:4
Score:0.73
Offset:-8
Orientation:reverse strand
Alignment:--------CGCCATTTTT
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCATTTTT
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGCCATTTTT-
-NCCATTGTTC
 A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CGCCATTTTT--
--CCATTGTTYB
 A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CGCCATTTTT--
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGCCATTTTT-
-NCCATTGTTY
 A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T A C G T
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCATTTTT-
--CCATTGTTC
 A G T C A C T G T G A C G T A C G T C A A G C T G A C T A C G T A G C T A G C T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C