Information for 3-AARGCAGGGAAAG (Motif 6)

C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T A C G T G A C T A G T C A G T C A G T C A G C T A C T G A G T C A G C T A C G T A C G T
p-value:1e-10
log p-value:-2.352e+01
Information Content per bp:1.883
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 26.9bp
Average Position of motif in Background56.6 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AARGCAGGGAAAG
CACAGCAGGGGG--
 A C G T C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AARGCAGGGAAAG-
--GAAAGTGAAAGT
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G A C G T
A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AARGCAGGGAAAG---
-AGAAAGTGAAAGTGA
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G A C G T A C G T A C G T
A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AARGCAGGGAAAG
-WDNCTGGGCA--
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AARGCAGGGAAAG----
-----TGGGGAAGGGCM
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AARGCAGGGAAAG
AAGGCAAGTGT--
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AARGCAGGGAAAG
--GGGCGGGAAGG
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AARGCAGGGAAAG
-----TGGGGA--
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AARGCAGGGAAAG-
ANTGCGGGGGCGGN
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G A C G T
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AARGCAGGGAAAG
-CGGAAGTGAAAC
 C G T A C G T A C T A G A C T G A G T C C T G A A C T G A C T G A C T G C T G A C G T A C T G A A C T G
A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C