Information for 7-CCGCCAAGGTAGG (Motif 5)

A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T C G T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C C A T G A C T G
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.2 +/- 14.8bp
Average Position of motif in Background62.4 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCGCCAAGGTAGG
-TGCCAA------
 A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGCCAAGGTAGG
CGTGCCAAG-----
 A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCGCCAAGGTAGG---
-----CAGGTAAGTAT
 A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCGCCAAGGTAGG
TTTCCCGCCMAV-----
 A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CCGCCAAGGTAGG
TACGCCCCGCCACTCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCGCCAAGGTAGG
GGTGCCAAGT----
 A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCGCCAAGGTAGG
TTGCCAAG-----
 A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCGCCAAGGTAGG
TTTCCCGCCAAA-----
 A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCGCCAAGGTAGG
--BTCAAGGTCA-
 A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CCGCCAAGGTAGG
CCTTCGGCGCCAAAAGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C C G T A C G T A A C T G C T A G A C G T C T G A A C T G A T C G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T A C G T