Information for 1-AGGTGGCAGC (Motif 2)

C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
Reverse Opposite:
C A T G T A G C C G A T A C T G A T G C T G A C G T C A G A T C A G T C A G C T
p-value:1e-15
log p-value:-3.645e+01
Information Content per bp:1.827
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.10%
Number of Background Sequences with motif561.1
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets48.9 +/- 24.7bp
Average Position of motif in Background52.3 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGC
AGGTGTCA--
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGC
GGTTGGCAT-
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGC---
AGGTGNCAGACAG
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C A C G T A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGTGGCAGC
CAAGATGGCGGC
 A C G T A C G T C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGTGGCAGC-
-VBTGWCAGCB
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGC--
AGGTGHCAGACA
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGC
ARNTGACA--
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------AGGTGGCAGC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGC
AGGTGTGA--
 C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGGCAGC
NNCAGGTGNN---
 A C G T A C G T A C G T C T G A C T A G C T A G C A G T A C T G A T C G G T A C C G T A A T C G G T A C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T