Information for 4-CAKGCTGGGCAGC (Motif 11)

A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
Reverse Opposite:
A C T G T A G C G C A T A T C G A G T C G T A C A T G C G T C A A C T G A T G C G T C A C A G T T C A G
p-value:1e-9
log p-value:-2.092e+01
Information Content per bp:1.774
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif126.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets47.8 +/- 26.4bp
Average Position of motif in Background54.3 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAKGCTGGGCAGC
-WDNCTGGGCA--
 A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGGGCAGC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGGGCAGC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGGGCAGC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAKGCTGGGCAGC
CCTGCTGAGH---
 A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAKGCTGGGCAGC
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAKGCTGGGCAGC
---NGTGGGCAT-
 A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGGGCAGC
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGGGCAGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAKGCTGGGCAGC---
NNNNTTGGGCACNNCN
 A G T C G T C A C A G T A T C G G T A C A C G T A T C G C A T G C T A G A T G C C G T A A C T G G T A C A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C