Information for 1-GCGCCCCCTGSTGGCC (Motif 1)

A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
Reverse Opposite:
C T A G A T C G A G T C A G T C C G T A A T G C T A G C C G T A A C T G T C A G A C T G C T A G A T C G T G A C C T A G A T G C
p-value:1e-27
log p-value:-6.247e+01
Information Content per bp:1.674
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.10%
Number of Background Sequences with motif292.0
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets48.9 +/- 26.8bp
Average Position of motif in Background50.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCCCTGSTGGCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCCCTGSTGGCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCCCTGSTGGCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTGGCC
-GGCCYCCTGCTGDGH
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCGCCCCCTGSTGGCC
---CCCCCTGCTGTG-
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTGGCC
-CACCCCCGGGGGGG-
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTGGCC
-GACCCCCCGCTGTGC
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTGGCC
-CCCCCCCGGGGGGGT
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCCCTGSTGGCC
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTGSTGGCC
-CCCCCCCGGGGGGGT
 A T C G G A T C A C T G A T G C A G T C G T A C A G T C T A G C G C A T A T C G A T C G G C A T C T A G A C T G T A G C G A T C
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T