Information for 4-CCGCTGGGAG (Motif 9)

A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G
Reverse Opposite:
T A G C A G C T A T G C A T G C A G T C C G T A C A T G A G T C A T C G T A C G
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.489
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif8.97%
Number of Background Sequences with motif2075.3
Percentage of Background Sequences with motif4.27%
Average Position of motif in Targets48.7 +/- 24.9bp
Average Position of motif in Background50.2 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC4/MA0751.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGGGAG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGGGAG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCGCTGGGAG--
CACAGCGGGGGGTC
 A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGGGAG--
NCCCCCCCGGGGGGN
 A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGGGAG--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGGGAG--
ACCCCCCCGGGGGGN
 A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCGCTGGGAG
--GCTGTG--
 A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGCTGGGAG
CACAGCAGGGGG
 A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCGCTGGGAG-
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCGCTGGGAG--
CCCCCCCGGGGGNN
 A C G T A C G T A T G C T A G C T C A G G T A C G C A T T C A G T A C G T A C G T C G A A T C G A C G T A C G T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G