Information for 2-CGTGGCTGCYGAGGGT (Motif 7)

A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A G T A C G T A C A G T C A C G T A G T C T C A G A C T G A G T C C G T A A C T G A T G C A G T C G T C A A G T C A C T G
p-value:1e-10
log p-value:-2.488e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 14.7bp
Average Position of motif in Background79.2 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGTGGCTGCYGAGGGT
----CCTGCTGAGH--
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT
-CCCCCTGCTGTG---
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT-
--NCGCAGCGGGGGGTC
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CGTGGCTGCYGAGGGT
-TWGTCTGV-------
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT
-TNTCCTGCTGTGNNG
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CGTGGCTGCYGAGGGT
GTCATGCHTGRCTGS-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT-
------TGCTGTGATTT
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT-
--NCNCAGCGGGGGGTC
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CGTGGCTGCYGAGGGT
CGCAGCTGCG------
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CGTGGCTGCYGAGGGT
-TCNCCTGCTGNGNNN
 A G T C C T A G A C G T A C T G A T C G A G T C A C G T A C T G A G T C A G C T A C T G C G T A A C T G A C T G A C T G A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G