Information for 3-TGGCAGAVATAAG (Motif 2)

A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T C G A T G T C A A G C T A G T C A C G T A G T C A G C T A T C G A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.899e+01
Information Content per bp:1.865
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 27.5bp
Average Position of motif in Background64.4 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gata1/MA0035.3/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TGGCAGAVATAAG--
----ANAGATAAGAA
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Gata4/MA0482.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGCAGAVATAAG-
---NNGAGATAAGA
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T
A C G T A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGAVATAAG
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGAVATAAG--------
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAVATAAG
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TGGCAGAVATAAG--
-----NAGATAAGNN
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGGCAGAVATAAG--
-----CAGATAAGGN
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

GATA2/MA0036.2/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGGCAGAVATAAG-----
----NCAGATAAGAANNN
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TGGCAGAVATAAG-
------AGATAAGA
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGCAGAVATAAG-
----NVAGATAAGR
 A C G T A C T G A C T G A T G C C T G A A C T G C G T A T A C G C T G A A C G T C G T A C T G A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A