Information for 1-CCACTAGATGGCA (Motif 2)

A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A
Reverse Opposite:
A G C T A C T G A G T C A G T C G T C A A G C T A G T C A C G T C T G A A C T G A C G T A C T G A C T G
p-value:1e-55
log p-value:-1.275e+02
Information Content per bp:1.905
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif7.55%
Number of Background Sequences with motif197.6
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets56.2 +/- 29.3bp
Average Position of motif in Background50.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGATGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGATGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGATGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACTAGATGGCA
--AACAGATGGC-
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCACTAGATGGCA--
---CAAGATGGCGGC
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACTAGATGGCA--
---CAAGATGGCGGC
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCACTAGATGGCA-
-----GGTTGGCAT
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCACTAGATGGCA
--AACAGATGGT-
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCACTAGATGGCA
VNAVCAGCTGGC-
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCACTAGATGGCA
-----ARNTGACA
 A G T C A G T C C G T A A G T C G A C T C G T A A C T G C T G A A C G T A C T G A C T G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A