Information for 2-CCAGCCDSTGGCTKTG (Motif 5)

A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
Reverse Opposite:
G T A C G C T A T G C A C T G A C T A G A G T C G T A C C G T A T A G C G T C A A C T G A C T G A T G C A C G T A C T G T A C G
p-value:1e-12
log p-value:-2.916e+01
Information Content per bp:1.740
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 23.3bp
Average Position of motif in Background57.7 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
--AGCCTCAGGCA---
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
--AGCCTCAGGCA---
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
--CGCCTCAGGCA---
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
ATTGCCTCAGGCAAT-
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGCCDSTGGCTKTG
NTNGCCTCAGGCNNN-
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
---SCCTSAGGSCAW-
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A C G T A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGCCDSTGGCTKTG
-CAGCC----------
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAGCCDSTGGCTKTG
BCAGACWA--------
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGCCDSTGGCTKTG----
YCAGGCWCAGTACCAGGCTC
 A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CCAGCCDSTGGCTKTG
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A T C G A G T C A G T C C A G T A T C G C G A T A C T G A C T G A G T C G A C T A C G T C G A T A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T